View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_146 (Length: 221)
Name: NF1435_low_146
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_146 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 24 - 205
Target Start/End: Complemental strand, 23696749 - 23696567
Alignment:
| Q |
24 |
ttcacagaaagagtgtgaacagttttggtttttaaacatatcttcaacaggtttagcttccatgcagatagcacagtaggatttttt-caattgagaaga |
122 |
Q |
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| T |
23696749 |
ttcacagaaagagtgtgaacagttttggttttcgaacatttctgcagcaggtttagcttccatgcagatagcacagtaggatttttttcaattgagaaga |
23696650 |
T |
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| Q |
123 |
agattcaccttcaacaggtttgaggttagtttcagtatcaacatttgcatgcaccacaggtaattgtatttcatctgcatatt |
205 |
Q |
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| T |
23696649 |
agattcacattcaacaggtttgaggttagtttcagtatcaacatttgcatgcaccgcaggtaattgtatttcatctgcatatt |
23696567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 23701178 - 23701286
Alignment:
| Q |
17 |
cacaatattcacagaaagagtgtgaacagttttggtttttaaacatatcttcaacaggtttagcttccatgcagatagcacagtaggattttttcaattg |
116 |
Q |
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|||||||||||||||||||||||||||| ||| |||||| ||||| ||||||||||||||||||||||| |||||| |||| ||||||| |||||| || |
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| T |
23701178 |
cacaatattcacagaaagagtgtgaacattttcggttttggaacatttcttcaacaggtttagcttccatacagatatcacaataggattgtttcaactg |
23701277 |
T |
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| Q |
117 |
agaagaaga |
125 |
Q |
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||||||||| |
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| T |
23701278 |
agaagaaga |
23701286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 23694624 - 23694517
Alignment:
| Q |
18 |
acaatattcacagaaagagtgtgaacagttttggtttttaaacatatcttcaacaggtttagcttccatgcagatagcacagtaggattttttcaattga |
117 |
Q |
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||||| |||||||||||| |||||||| |||||||| | ||||| |||||||| |||||||||||||| || |||||||||||||||| |||||| ||| |
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| T |
23694624 |
acaatcttcacagaaagaatgtgaacatttttggttctggaacatttcttcaacgggtttagcttccatacaaatagcacagtaggattgtttcaactga |
23694525 |
T |
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| Q |
118 |
gaagaaga |
125 |
Q |
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|||||||| |
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| T |
23694524 |
gaagaaga |
23694517 |
T |
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