View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1435_low_151 (Length: 208)

Name: NF1435_low_151
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1435_low_151
NF1435_low_151
[»] chr2 (2 HSPs)
chr2 (24-197)||(38950659-38950832)
chr2 (94-165)||(28296293-28296364)
[»] chr6 (3 HSPs)
chr6 (24-184)||(18331767-18331945)
chr6 (94-166)||(29280480-29280552)
chr6 (99-144)||(27766193-27766237)
[»] chr3 (1 HSPs)
chr3 (24-67)||(9461255-9461298)
[»] chr8 (1 HSPs)
chr8 (24-86)||(27513634-27513696)
[»] chr1 (1 HSPs)
chr1 (28-86)||(39210097-39210155)
[»] chr5 (1 HSPs)
chr5 (99-144)||(12871034-12871078)


Alignment Details
Target: chr2 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 24 - 197
Target Start/End: Complemental strand, 38950832 - 38950659
Alignment:
Q  24 aattttgattgttttgacctaatttgaatatgattagattagatttcaaagttgtgagtgtagtgtatcggaactttttcaactcaaaattattggtttt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38950832 aattttgattgttttgacctaatttgaatatgattagattagatttcaaagttgtgagtgtagtgtatcggaactttttcaactcaaaattattggtttt 38950733  T
Q  124 tctattcatttgtgaaatttttaacctacccactttctagattagtcatcaaagtgttgtatagaaagagtatt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38950732 tctattcatttgtgaaatttttaacctacccactttctagattagtcatcaaagtgttgtatagaaagagtatt 38950659  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 28296364 - 28296293
Alignment:
Q  94 gaactttttcaactcaaaattattggtttttctattcatttgtgaaatttttaacctacccactttctagat 165  Q
    |||||||||||| |||||| | ||||||||||| |||||||||||||| || |||| ||||| || ||||||    
T  28296364 gaactttttcaaatcaaaactgttggtttttctgttcatttgtgaaatattgaaccaacccatttgctagat 28296293  T

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Target: chr6 (Bit Score: 104; Significance: 5e-52; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 18331945 - 18331767
Alignment:
Q  24 aattttgattgttttgacctaatttgaatatgattagattagatttcaaagttgtgagtgtag------------------tgtatcggaactttttcaa 105  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||                  |||||||||||||||||||    
T  18331945 aattttgattgttttgacataatttgaatatgattagattagatttcaatattgtgagtgtagaatatgatcaatcatttatgtatcggaactttttcaa 18331846  T
Q  106 ctcaaaattattggtttttctattcatttgtgaaatttttaacctacccactttctagattagtcatcaaagtgttgta 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18331845 ctcaaaattattggtttttctattcatttgtgaaatttttaacctacccactttctagattagtcatcaaagtgctgta 18331767  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 29280480 - 29280552
Alignment:
Q  94 gaactttttcaactcaaaattattggtttttctattcatttgtgaaatttttaacctacccactttctagatt 166  Q
    |||||||||||| |||||||| || |||||||| |||||||||||||| || |||| ||||| || |||||||    
T  29280480 gaactttttcaaatcaaaattgttagtttttctgttcatttgtgaaatattgaaccaacccatttgctagatt 29280552  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 27766193 - 27766237
Alignment:
Q  99 ttttcaactcaaaattattggtttttctattcatttgtgaaatttt 144  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||    
T  27766193 ttttcaactcaaaatcattggtttttctatt-atttgtgaaatttt 27766237  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 9461255 - 9461298
Alignment:
Q  24 aattttgattgttttgacctaatttgaatatgattagattagat 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9461255 aattttgattgttttgacctaatttgaatatgattagattagat 9461298  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 27513696 - 27513634
Alignment:
Q  24 aattttgattgttttgacctaatttgaatatgattagattagatttcaaagttgtgagtgtag 86  Q
    |||||||| |||||||| ||||||||||||||| ||||||||||||||| | |||||||||||    
T  27513696 aattttgagtgttttgaactaatttgaatatgaatagattagatttcaatgatgtgagtgtag 27513634  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 39210097 - 39210155
Alignment:
Q  28 ttgattgttttgacctaatttgaatatgattagattagatttcaaagttgtgagtgtag 86  Q
    |||||| |||||| ||||||||||||||| ||||||||||| ||| |||||||||||||    
T  39210097 ttgatttttttgaactaatttgaatatgaatagattagattccaatgttgtgagtgtag 39210155  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 12871034 - 12871078
Alignment:
Q  99 ttttcaactcaaaattattggtttttctattcatttgtgaaatttt 144  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||    
T  12871034 ttttcaactcaaaatcattggtttttctatt-atttgtgaaatttt 12871078  T

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