View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_155 (Length: 204)
Name: NF1435_low_155
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_155 |
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Alignment Details
Target: chr6 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 18078720 - 18078896
Alignment:
| Q |
10 |
gcagcacagacagttagggttcacctacatttgaaatttcaatggcggaggaagagaacaacgtcatagacacatatacagtaaaaatcaaagtcacact |
109 |
Q |
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| T |
18078720 |
gcagcatagacaattacggttcacctacatttgaaatttcaatggcggaggacgagaacagcgtcatagtcacatatacagtaaaaatcaaagtcagact |
18078819 |
T |
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| Q |
110 |
cacagtcccggacctaaacgaactcattcctgatcatgatcatcgatggagacggtaccgttggagggtgatgacgt |
186 |
Q |
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| T |
18078820 |
cacagtcccggacctagacgaacccattcctgatcatgatcatcgatggagacggtaccgttggagggtgatgacgt |
18078896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 18076816 - 18076913
Alignment:
| Q |
21 |
agttagggttcacctacatttgaaatttcaatggcggaggaagagaacaacgtcatagacacatatacagtaaaaatcaaagtcacactcacagtccc |
118 |
Q |
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| T |
18076816 |
agttagggttaacctgcatttcaaatttctatggcgggagaagagaaccaccacatagtcacatatatagtgaaaatcaaagtcacactcacggtccc |
18076913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 51478309 - 51478443
Alignment:
| Q |
21 |
agttagggttcacctacatttgaaatttcaatggcggaggaagagaacaacgtcatagacacatatacagtaaaaatcaaagtcacactcacagtcccgg |
120 |
Q |
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| T |
51478309 |
agttagggctcacctgcatttgaaatttcaatggctgaggaagagaacaatgacatagtcacgtatatagtgaaaatcaaagtcatactcaccgtcccgg |
51478408 |
T |
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| Q |
121 |
acctaaacgaactcattcctgatcatgatcatcga |
155 |
Q |
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| T |
51478409 |
acccagatgaacccattcctgatcatgatcatcga |
51478443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 37 - 153
Target Start/End: Original strand, 51454143 - 51454259
Alignment:
| Q |
37 |
catttgaaatttcaatggcggaggaagagaacaacgtcatagacacatatacagtaaaaatcaaagtcacactcacagtcccggacctaaacgaactcat |
136 |
Q |
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| T |
51454143 |
cattcgaaatttcaatggcggaggaagagaacaaccacacagtcacttatatagtgaaaatcaaagtcacactcaccctccctgattcagatgaacccat |
51454242 |
T |
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| Q |
137 |
tcctgatcatgatcatc |
153 |
Q |
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| T |
51454243 |
tcctgatcatgatcatc |
51454259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 42431704 - 42431626
Alignment:
| Q |
33 |
cctacatttgaaatttcaatggcggaggaagagaacaacgtcatagacacatatacagtaaaaatcaaagtcacactca |
111 |
Q |
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| T |
42431704 |
cctacattagaaatttcaatggcggaggaagagaacaacgacattgccacatatattgtgaaaatcaaagtcacactca |
42431626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 42433368 - 42433456
Alignment:
| Q |
37 |
catttgaaatttcaatggcggaggaagagaacaacgtcatagacacatatacagtaaaaatcaaagtcacactcacagtcccggaccta |
125 |
Q |
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| T |
42433368 |
catttgaaatttcaatggcggaggaagagaacaacgacattgtcacatatgttgtgcaaatcaaagtcaccctcattgtcccagaccta |
42433456 |
T |
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