View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1435_low_16 (Length: 492)

Name: NF1435_low_16
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1435_low_16
NF1435_low_16
[»] chr4 (11 HSPs)
chr4 (19-473)||(54678317-54678775)
chr4 (48-289)||(54687625-54687863)
chr4 (87-289)||(26997222-26997422)
chr4 (87-282)||(52311185-52311378)
chr4 (87-289)||(26992025-26992228)
chr4 (87-228)||(20275934-20276073)
chr4 (105-282)||(17365715-17365889)
chr4 (20-83)||(20275838-20275901)
chr4 (20-83)||(26997126-26997189)
chr4 (22-110)||(12746666-12746758)
chr4 (207-289)||(22746678-22746759)
[»] chr7 (6 HSPs)
chr7 (50-287)||(33190270-33190509)
chr7 (105-282)||(39865464-39865639)
chr7 (63-287)||(26617712-26617935)
chr7 (19-83)||(7578490-7578554)
chr7 (30-192)||(14719368-14719537)
chr7 (171-223)||(37479560-37479612)
[»] chr1 (5 HSPs)
chr1 (87-246)||(40279158-40279315)
chr1 (85-272)||(40274346-40274529)
chr1 (18-83)||(40274560-40274625)
chr1 (215-283)||(29530252-29530320)
chr1 (245-289)||(26023622-26023666)
[»] chr5 (8 HSPs)
chr5 (88-282)||(19779927-19780119)
chr5 (87-247)||(19479453-19479611)
chr5 (88-282)||(19783175-19783366)
chr5 (48-238)||(16633272-16633463)
chr5 (19-83)||(19780153-19780217)
chr5 (30-192)||(17604654-17604823)
chr5 (19-73)||(19479652-19479706)
chr5 (18-103)||(21575047-21575136)
[»] chr8 (7 HSPs)
chr8 (194-290)||(10739135-10739231)
chr8 (171-289)||(10734076-10734194)
chr8 (194-289)||(15007176-15007270)
chr8 (171-289)||(17909897-17910016)
chr8 (210-289)||(36911894-36911973)
chr8 (27-56)||(10738947-10738976)
chr8 (171-223)||(28350580-28350632)
[»] chr3 (5 HSPs)
chr3 (147-291)||(8832496-8832640)
chr3 (127-218)||(39875817-39875906)
chr3 (171-290)||(44126675-44126795)
chr3 (20-71)||(39875693-39875744)
chr3 (19-83)||(44122154-44122218)
[»] chr2 (2 HSPs)
chr2 (19-223)||(19912233-19912439)
chr2 (19-136)||(34111056-34111178)
[»] chr6 (1 HSPs)
chr6 (201-289)||(23599900-23599988)


Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 473
Target Start/End: Complemental strand, 54678775 - 54678317
Alignment:
Q  19 gcatatcctcatggacattcaagggggagtgttatgaaataaagacttagtggatatccatccttcttcaccttcctataaccccaattagtaagtgaat 118  Q
    |||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||| |||||||||    
T  54678775 gcatatcctcatagacatccaagggggagtgttatgaaataaagacttagtggatgtccatccttcttcaccttcctataacccccgttattaagtgaat 54678676  T
Q  119 agttggtggaccttaatttccttgatcacacttacttacttatcttgtgtattataaataggactcatattgtattgtaaagatacatttgtgaagagaa 218  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  54678675 agttggtggaccttaatttcattgatcacacttacttactcatcttgtgtattataaataggactcatattatattgtaaagatacgtttgtgaagagaa 54678576  T
Q  219 caatagaaagtgttttcatcttctccttcctcctgttctttgatcttgtgtttttcctttatttcttaacatacacannnnnnnaggagcaagatatttc 318  Q
     |||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||       | ||||||||||||||    
T  54678575 taataaaaagtgttttcatcttctccttcctcttcttctttgatcttgtgtttttcctttatttcttaacatacacatttttttatgagcaagatatttc 54678476  T
Q  319 aaaatgaaaatcatatgcaagtaacatatttttgc----aggtgtgtaatgtgtattaagcacgattaatcattcacttaacatataataatagatggac 414  Q
    |||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54678475 aaaatgaaaatcatatgcaagtaacatatttttgcaggtaggtgtgtaatgtgtattaagcacgattaatcattcacttaacatataataatagatggac 54678376  T
Q  415 ggggacgagttctctctgagcacccaaaggacaacggggccctccataaagaccattat 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54678375 ggggacgagttctctctgagcacccaaaggacaacggggccctccataaagaccattat 54678317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 48 - 289
Target Start/End: Complemental strand, 54687863 - 54687625
Alignment:
Q  48 tgttatgaaataaagacttagtggatatccatccttcttcaccttcctataaccccaattagtaagtgaatagttggtggaccttaatttccttgatcac 147  Q
    |||||||||||||||| ||| ||||||| ||| ||||||||| |||||||||||||| |||||||||||||| || | |||||| ||||| |||||||||    
T  54687863 tgttatgaaataaagaattactggatatacattcttcttcactttcctataacccca-ttagtaagtgaataattaggggacctcaattttcttgatcac 54687765  T
Q  148 acttacttacttatcttgtgtattataaataggactcatattgtattgtaaagatacatttgtgaagagaacaatagaaagtgttttcatcttctccttc 247  Q
      ||||||||| ||||||| || ||||||||||  |||||||||||| |||||||||| |||||||||||| |||| |||||| ||||||||||||||||    
T  54687764 --ttacttactcatcttgtatactataaatagggttcatattgtattataaagatacacttgtgaagagaataatacaaagtgatttcatcttctccttc 54687667  T
Q  248 ctcctgttctttgatcttgtgtttttcctttatttcttaaca 289  Q
    ||| | ||||||||| ||||| |||| |||||||||||||||    
T  54687666 ctcttcttctttgattttgtgcttttactttatttcttaaca 54687625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 87 - 289
Target Start/End: Original strand, 26997222 - 26997422
Alignment:
Q  87 caccttcctataaccccaattagtaagtgaatagttggtggaccttaatttccttgatcacacttacttacttatcttgtgtattataaataggactcat 186  Q
    |||||||||||||| |  |||||||||||||||||  ||| ||||||||  | ||||  ||||| ||||||| |||||||||| ||||||||||||||||    
T  26997222 caccttcctataactctcattagtaagtgaatagtcagtgaaccttaatagctttga--acactaacttactcatcttgtgtactataaataggactcat 26997319  T
Q  187 attgtattgtaaagatacatttgtgaagagaacaatagaaagtgttttcatcttctccttcctcctgttctttgatcttgtgtttttcctttatttctta 286  Q
    ||| ||||| ||||| | | |||||||||||| |||| |||||| ||||||||||||||| ||| | |||||||||||||||  ||| ||||||||||||    
T  26997320 attatattgcaaagacatacttgtgaagagaataatacaaagtgctttcatcttctcctttctcttcttctttgatcttgtgcatttactttatttctta 26997419  T
Q  287 aca 289  Q
    |||    
T  26997420 aca 26997422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 87 - 282
Target Start/End: Complemental strand, 52311378 - 52311185
Alignment:
Q  87 caccttcctataaccccaattagtaagtgaatagttggtggaccttaatttccttgatcacacttacttacttatcttgtgtattataaataggactcat 186  Q
    ||||||||||||||||| ||| || ||||||||||| ||||||||||||||| |||||||| |  ||||| | |||||||||  ||||||||||| ||||    
T  52311378 caccttcctataacccctattggtgagtgaatagttagtggaccttaatttctttgatcactc--acttagtcatcttgtgtcctataaataggattcat 52311281  T
Q  187 attgtattgtaaagatacatttgtgaagagaacaatagaaagtgttttcatcttctccttcctcctgttctttgatcttgtgtttttcctttattt 282  Q
    |||| | |||||||| |||||||||||||||| |||| ||| |||||||||| ||| |||| ||   ||||||||||||||||||||  |||||||    
T  52311280 attgcagtgtaaagacacatttgtgaagagaataatacaaaatgttttcatcatcttcttcttctacttctttgatcttgtgtttttagtttattt 52311185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 87 - 289
Target Start/End: Original strand, 26992025 - 26992228
Alignment:
Q  87 caccttcctataaccccaattagtaagtgaatagttggtggaccttaatttccttgatcacacttacttacttatcttgtgtattataaataggactcat 186  Q
    |||||||||||||  |  |||||||||||||||||| ||||||||||||| |||||||  |||| ||||| | |||  ||||| |||||||||| |||||    
T  26992025 caccttcctataaatctcattagtaagtgaatagttagtggaccttaattgccttgat--cactaacttattcatcccgtgtactataaatagggctcat 26992122  T
Q  187 attgtattgtaaagatacatttgtgaagag---aacaatagaaagtgttttcatcttctccttcctcctgttctttgatcttgtgtttttcctttatttc 283  Q
    ||| ||||| ||||||| | ||||||||||   || |||| |||||  |||||||||||| |||||| | |||||||||||||||  ||| |||||||||    
T  26992123 attatattgcaaagatatacttgtgaagagaataataatacaaagtactttcatcttctctttcctcttcttctttgatcttgtgcatttactttatttc 26992222  T
Q  284 ttaaca 289  Q
    ||||||    
T  26992223 ttaaca 26992228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 87 - 228
Target Start/End: Original strand, 20275934 - 20276073
Alignment:
Q  87 caccttcctataaccccaattagtaagtgaatagttggtggaccttaatttccttgatcacacttacttacttatcttgtgtattataaataggactcat 186  Q
    ||||||||||||||  | |||||||||||||||||| ||||||||||| | |||||||||| |  ||||||| ||||| |||| ||||||||||||||||    
T  20275934 caccttcctataacttccattagtaagtgaatagttagtggaccttaactgccttgatcactc--acttactcatcttatgtactataaataggactcat 20276031  T
Q  187 attgtattgtaaagatacatttgtgaagagaacaatagaaag 228  Q
    ||||||||||||||| |||  |||||| |||| |||| ||||    
T  20276032 attgtattgtaaagacacacatgtgaacagaataatacaaag 20276073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 105 - 282
Target Start/End: Original strand, 17365715 - 17365889
Alignment:
Q  105 attagtaagtgaatagttggtggaccttaatttccttgatcacacttacttacttatcttgtgtattataaataggactcatattgtattgtaaagatac 204  Q
    |||||| ||||||||||| ||||||||||||||| |||||  |||| ||||||| |||||||||  |||||||| | ||| |||| || |||||||| ||    
T  17365715 attagtgagtgaatagttagtggaccttaatttctttgat--cactcacttactcatcttgtgtcctataaataaggctc-tattatagtgtaaagaaac 17365811  T
Q  205 atttgtgaagagaacaatagaaagtgttttcatcttctccttcctcctgttctttgatcttgtgtttttcctttattt 282  Q
     |||||||| | || |||| ||| |||||||| | ||| |||||||   ||||||||| ||||| ||||  |||||||    
T  17365812 ctttgtgaacaaaataatacaaaatgttttcaccatcttcttcctctgcttctttgatattgtgcttttagtttattt 17365889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 20275838 - 20275901
Alignment:
Q  20 catatcctcatggacattcaagggggagtgttatgaaataaagacttagtggatatccatcctt 83  Q
    |||||| | |||||||| ||||||||||||||||||||||| |||||||||||| |||||||||    
T  20275838 catatcatgatggacatccaagggggagtgttatgaaataatgacttagtggatgtccatcctt 20275901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 26997126 - 26997189
Alignment:
Q  20 catatcctcatggacattcaagggggagtgttatgaaataaagacttagtggatatccatcctt 83  Q
    |||||||| |||||||| ||||||||||||||||||||||| |||||||||||| | |||||||    
T  26997126 catatcctgatggacatccaagggggagtgttatgaaataatgacttagtggatgttcatcctt 26997189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 12746758 - 12746666
Alignment:
Q  22 tatcctcatggacattcaagggggagtgttatgaaataaagacttagtggatatccatcct---tctt-caccttcctataaccccaattagt 110  Q
    |||||| ||||||||||||||||||||||||||||  | |  |||||||||| ||||||||   |||| ||||||||||||||| | ||||||    
T  12746758 tatcctgatggacattcaagggggagtgttatgaataataagcttagtggatgtccatcctcaatcttccaccttcctataaccactattagt 12746666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 207 - 289
Target Start/End: Original strand, 22746678 - 22746759
Alignment:
Q  207 ttgtgaagagaacaatagaaagtgttttcatcttctccttcctcctgttctttgatcttgtgtttttcctttatttcttaaca 289  Q
    |||||||||||| |||| |||||  ||||||||||| | ||||| | |||||||||||| |||||||  ||||||||||||||    
T  22746678 ttgtgaagagaataatacaaagtactttcatcttcttcctcctcgtcttctttgatcttatgttttt-gtttatttcttaaca 22746759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 50 - 287
Target Start/End: Complemental strand, 33190509 - 33190270
Alignment:
Q  50 ttatgaaataaagacttagtggatatccatccttc-----ttcaccttcctataaccccaattagtaagtgaatagttggtggaccttaatttccttgat 144  Q
    ||||||||||| |||||||||||| | |||||||      |||||||||||||||   | ||| ||||||||||||||  ||||||||| || |||||||    
T  33190509 ttatgaaataatgacttagtggatgtacatccttaagtctttcaccttcctataatttccattggtaagtgaatagttactggaccttagttgccttgat 33190410  T
Q  145 cacacttacttacttatcttgtgtattataaataggactcatattgtattgtaaagatacatttgtgaagagaacaatagaaagtgttttcatcttctcc 244  Q
    ||| |  ||||||| |||||||||||||||| |||| |||||||||||||| ||||| ||| |||||||||||| |||| |||||| |||||||||||||    
T  33190409 cactc--acttactcatcttgtgtattataa-taggtctcatattgtattgcaaagacacacttgtgaagagaataatacaaagtgctttcatcttctcc 33190313  T
Q  245 ttcctcctgttctttgatcttgtgtttttcctttatttcttaa 287  Q
    |||||| | ||||||||||||||| |||| |||||||||||||    
T  33190312 ttcctcttcttctttgatcttgtgcttttactttatttcttaa 33190270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 105 - 282
Target Start/End: Original strand, 39865464 - 39865639
Alignment:
Q  105 attagtaagtgaatagttggtggaccttaatttccttgatcacacttacttacttatcttgtgtattataaataggactcatattgtattgtaaagatac 204  Q
    |||||||||||||||||| |||||||||||||  ||||||||| |  ||||||| |||||||||| |||||||||| ||||||| |||||| ||||| ||    
T  39865464 attagtaagtgaatagttagtggaccttaattgtcttgatcactc--acttactcatcttgtgtactataaatagggctcatatcgtattgcaaagacac 39865561  T
Q  205 atttgtgaagagaacaatagaaagtgttttcatcttctccttcctcctgttctttgatcttgtgtttttcctttattt 282  Q
    | |  ||||||||| |||| |||||| ||||||||||||||||||| | ||||||||||||||| |||| ||||||||    
T  39865562 actcttgaagagaataatacaaagtgctttcatcttctccttcctcttcttctttgatcttgtgcttttactttattt 39865639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 63 - 287
Target Start/End: Complemental strand, 26617935 - 26617712
Alignment:
Q  63 acttagtggatatccatccttc----ttcaccttcctataaccccaattagtaagtgaatagttggtggaccttaatttccttgatcacacttacttact 158  Q
    ||||||||||| |||||||||     ||||| ||||||||||||| |||| | ||||||||||| |||||||||||||  ||||||||| |  ||||| |    
T  26617935 acttagtggatttccatccttagtctttcactttcctataacccccattaatgagtgaatagttagtggaccttaattatcttgatcactc--acttatt 26617838  T
Q  159 tatcttgtgtattataaataggactcatattgtattgtaaagatacatttgtgaagagaacaatagaaagtgttttcatcttctccttcctcctgttctt 258  Q
     ||||||  |  |||||||||| ||||||||| |||||||||| ||| |||||||||||| |||| |||||||||||||||||| |||||||   |||||    
T  26617837 catcttgaatcctataaatagggctcatattgaattgtaaagacacacttgtgaagagaataatacaaagtgttttcatcttcttcttcctc---ttctt 26617741  T
Q  259 tgatcttgtgtttttcctttatttcttaa 287  Q
    |||||||||| ||||  ||||||||||||    
T  26617740 tgatcttgtgcttttagtttatttcttaa 26617712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 7578490 - 7578554
Alignment:
Q  19 gcatatcctcatggacattcaagggggagtgttatgaaataaagac-ttagtggatatccatcctt 83  Q
    ||||||||| |||||||| |||||||||||||||||||  || ||| ||||||||| |||||||||    
T  7578490 gcatatcct-atggacatccaagggggagtgttatgaataaatgactttagtggatgtccatcctt 7578554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 192
Target Start/End: Complemental strand, 14719537 - 14719368
Alignment:
Q  30 tggacattcaagggggagtgttatgaaataaagactt-agtggatatccatcctt---cttc-accttcctataaccccaattagtaagtga----atag 120  Q
    ||||||| ||| |||||||||||||||  || ||||| ||||||| ||| |||||   |||| |||||||||||||||| |||||| |||||    ||||    
T  14719537 tggacatgcaaaggggagtgttatgaataaatgactttagtggatgtccgtccttagtcttccaccttcctataacccccattagtgagtgaatatatag 14719438  T
Q  121 ttggtggaccttaatttccttgatcacacttacttacttatcttgtgtattataaataggactcatattgta 192  Q
    || |||||||||||||   |||||  |||| |  || | || |||| | |||||||||||||||||||||||    
T  14719437 ttagtggaccttaattattttgat--cactcagctattcattttgtatcttataaataggactcatattgta 14719368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 37479612 - 37479560
Alignment:
Q  171 tataaataggactcatattgtattgtaaagatacatttgtgaagagaacaata 223  Q
    ||||||||||||  |||||| | |||||||| |||||||||||||||| ||||    
T  37479612 tataaataggacctatattgcaatgtaaagaaacatttgtgaagagaataata 37479560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 87 - 246
Target Start/End: Complemental strand, 40279315 - 40279158
Alignment:
Q  87 caccttcctataaccccaattagtaagtgaatagttggtggaccttaatttccttgatcacacttacttacttatcttgtgtattataaataggactcat 186  Q
    |||||||||||||| || |||||||||||||||||| ||||||||||||| |||||||||| |  ||||||| |||||||||| ||||||||||  ||||    
T  40279315 caccttcctataactcccattagtaagtgaatagttagtggaccttaattgccttgatcactc--acttactcatcttgtgtactataaatagggttcat 40279218  T
Q  187 attgtattgtaaagatacatttgtgaagagaacaatagaaagtgttttcatcttctcctt 246  Q
    ||||||||| ||||| |||||||||||||||| |||| ||||||||||||||||||||||    
T  40279217 attgtattgcaaagacacatttgtgaagagaataatataaagtgttttcatcttctcctt 40279158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 85 - 272
Target Start/End: Complemental strand, 40274529 - 40274346
Alignment:
Q  85 ttcaccttcctataaccccaattagtaagtgaa-tagttggtggaccttaatttccttgatcacacttacttacttatcttgtgtattataaataggact 183  Q
    ||||||||| |||||| || ||||||||||||| ||||| |||||| |||||| |||||||||| |  ||||||| ||||||||||||||||||||| ||    
T  40274529 ttcaccttcttataactcccattagtaagtgaaatagttagtggactttaattgccttgatcactc--acttactcatcttgtgtattataaatagggct 40274432  T
Q  184 catattgtattgtaaagatacatttgtgaagagaacaatagaaagtgttttcatcttctccttcctcctgttctttgatcttgtgtttt 272  Q
     ||||||||||| ||||| ||| |||||||||||| |||| |||||| |||||||||||||||||||   |||||||||||| ||||||    
T  40274431 aatattgtattgcaaagacacacttgtgaagagaataatacaaagtgctttcatcttctccttcctc---ttctttgatcttttgtttt 40274346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 40274625 - 40274560
Alignment:
Q  18 agcatatcctcatggacattcaagggggagtgttatgaaataaagacttagtggatatccatcctt 83  Q
    |||||||||| |||||||| ||||||||||||||||||||||| |||||||||||| |||||||||    
T  40274625 agcatatcctgatggacatccaagggggagtgttatgaaataatgacttagtggatgtccatcctt 40274560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 29530252 - 29530320
Alignment:
Q  215 agaacaatagaaagtgttttcatcttctccttcctcctgttctttgatcttgtgtttttcctttatttc 283  Q
    |||| |||| ||||||||||||||| || ||||||| | ||||||||||||||| ||||  ||||||||    
T  29530252 agaataatacaaagtgttttcatctccttcttcctcttcttctttgatcttgtgcttttagtttatttc 29530320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 26023622 - 26023666
Alignment:
Q  245 ttcctcctgttctttgatcttgtgtttttcctttatttcttaaca 289  Q
    |||||| | ||||||||||||||| |||| |||||||||||||||    
T  26023622 ttcctcatcttctttgatcttgtgcttttactttatttcttaaca 26023666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 88 - 282
Target Start/End: Complemental strand, 19780119 - 19779927
Alignment:
Q  88 accttcctataaccccaattagtaagtgaatagttggtggaccttaatttccttgatcacacttacttacttatcttgtgtattataaataggactcata 187  Q
    ||||||||||||| |  |||||||||||||||||| ||||||||||||| |||||||||| |  |||||||  ||||||||| |||||||||| ||||||    
T  19780119 accttcctataactctcattagtaagtgaatagttagtggaccttaattaccttgatcactc--acttactcgtcttgtgtactataaatagggctcata 19780022  T
Q  188 ttgtattgtaaagatacatttgtgaagagaacaatagaaagtgttttcatcttctccttcctcctgttctttgatcttgtgtttttcctttattt 282  Q
    |||||||  ||||| ||| |  ||||||||| |||| |||||| ||| |||||||| |||||| | ||||||||||||||| |||| ||||||||    
T  19780021 ttgtattacaaagacacactcttgaagagaataatacaaagtgcttttatcttctcattcctcttcttctttgatcttgtgcttttactttattt 19779927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 87 - 247
Target Start/End: Complemental strand, 19479611 - 19479453
Alignment:
Q  87 caccttcctataaccccaattagtaagtgaatagttggtggaccttaatttccttgatcacacttacttacttatcttgtgtattataaataggactcat 186  Q
    |||||||||||||| |  |||||||||||||||||| ||||||||||||| |||||||||| |   |||||| |||||||||| |||||||||| || ||    
T  19479611 caccttcctataactctcattagtaagtgaatagttagtggaccttaattgccttgatcactcg--cttactcatcttgtgtactataaatagggcttat 19479514  T
Q  187 attgtattgtaaagatacatttgtgaagagaacaatagaaagtgttttcatcttctccttc 247  Q
    ||||||||||||||| ||| || | ||||||| |||| |||||  ||||||||||| ||||    
T  19479513 attgtattgtaaagacacacttataaagagaataatacaaagttctttcatcttcttcttc 19479453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 88 - 282
Target Start/End: Complemental strand, 19783366 - 19783175
Alignment:
Q  88 accttcctataaccccaattagtaagtgaatagttggtggaccttaatttccttgatcacacttacttacttatcttgtgtattataaataggactcata 187  Q
    ||||||||||||| |  |||||||||||||||||| ||||| ||||||| | || ||||| |  ||||||| |||||||||| |||||||||  ||||||    
T  19783366 accttcctataactctcattagtaagtgaatagttagtggaacttaattgctttcatcactc--acttactcatcttgtgtactataaatagtgctcata 19783269  T
Q  188 ttgtattgtaaagatacatttgtgaagagaacaatagaaagtgttttcatcttctccttcctcctgttctttgatcttgtgtttttcctttattt 282  Q
    |||||| | ||||| ||| |  ||||||||| |||| |||||| ||| ||||||||||| ||| | || ||||||||| || |||| ||||||||    
T  19783268 ttgtat-gcaaagacacactcttgaagagaataatacaaagtgcttttatcttctcctttctcttcttttttgatcttatgcttttactttattt 19783175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 48 - 238
Target Start/End: Complemental strand, 16633463 - 16633272
Alignment:
Q  48 tgttatgaaataaagacttagtggatatccatcctt---cttc-accttcctataaccccaattagtaagtgaatagttggtggaccttaatttccttga 143  Q
    |||||||||  || |||||||||||| |||||||||   |||| ||||||||||||||||| ||||  ||||||||||| ||||||||||||| | ||||    
T  16633463 tgttatgaataaatgacttagtggatgtccatccttagtcttccaccttcctataacccca-ttagcgagtgaatagttagtggaccttaattactttga 16633365  T
Q  144 tcacacttacttacttatcttgtgtattataaataggactcatattgtattgtaaagatacatttgtgaagagaacaatagaaagtgttttcatc 238  Q
    |||  |  ||||||| | |||||||  |||||||||| |||||||||||||| ||||| ||  |||||||||||| |||| |||  |||||||||    
T  16633364 tcattc--acttactcaacttgtgtcctataaatagggctcatattgtattgcaaagacacgcttgtgaagagaataatataaaaggttttcatc 16633272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 19780217 - 19780153
Alignment:
Q  19 gcatatcctcatggacattcaagggggagtgttatgaaataaagacttagtggatatccatcctt 83  Q
    ||||||||  |||||||| ||||||||||||||||||||||| |||||||| ||| |||||||||    
T  19780217 gcatatcccgatggacatccaagggggagtgttatgaaataatgacttagttgatgtccatcctt 19780153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 192
Target Start/End: Original strand, 17604654 - 17604823
Alignment:
Q  30 tggacattcaagggggagtgttatgaaataaagactt-agtggatatccatcctt---cttc-accttcctataaccccaattagtaagtgaata----g 120  Q
    ||||||| ||| |||||||||||||||  || ||||| ||||||| |||||||||   |||| |||||||||||||||| |||||| ||||||||    |    
T  17604654 tggacatgcaaaggggagtgttatgaataaatgactttagtggatgtccatccttagtcttccaccttcctataacccccattagtgagtgaatatatag 17604753  T
Q  121 ttggtggaccttaatttccttgatcacacttacttacttatcttgtgtattataaataggactcatattgta 192  Q
    || |||||||||||||   |||||  |||| |  || | || |||| | |||||||||||||||||||||||    
T  17604754 ttagtggaccttaattattttgat--cactcagctattcattttgtatcttataaataggactcatattgta 17604823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 19479706 - 19479652
Alignment:
Q  19 gcatatcctcatggacattcaagggggagtgttatgaaataaagacttagtggat 73  Q
    ||||||||| |||||||| ||||| | ||||||||||||||| ||||| ||||||    
T  19479706 gcatatcctgatggacatccaaggagaagtgttatgaaataatgactttgtggat 19479652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 21575136 - 21575047
Alignment:
Q  18 agcatatcctcatggacattcaagggggagtgttatgaaataaaga-cttagtggatatccatcct---tctt-caccttcctataacccc 103  Q
    |||||||| | |||||||| ||| |||||||||||| ||||||| | |||||||||| ||||||||   |||| |||||||||||||||||    
T  21575136 agcatatcgtgatggacatccaatggggagtgttat-aaataaataacttagtggatgtccatccttagtcttccaccttcctataacccc 21575047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 194 - 290
Target Start/End: Original strand, 10739135 - 10739231
Alignment:
Q  194 tgtaaagatacatttgtgaagagaacaatagaaagtgttttcatcttctccttcctcctgttctttgatcttgtgtttttcctttatttcttaacat 290  Q
    |||||||||| | |||||||||||| |||| |||||| ||||||||||||| | ||| | ||||||||||||||| |||| ||||||||||||||||    
T  10739135 tgtaaagatatacttgtgaagagaataatacaaagtgctttcatcttctccattctcttcttctttgatcttgtgcttttactttatttcttaacat 10739231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 171 - 289
Target Start/End: Original strand, 10734076 - 10734194
Alignment:
Q  171 tataaataggactcatattgtattgtaaagatacatttgtgaagagaacaatagaaagtgttttcatcttctccttcctcctgttctttgatcttgtgtt 270  Q
    ||||||||||||  | |||||  |||||||||| | |||||||||||| |||| |||||||||||||||||| | | ||| | || ||||||||||||      
T  10734076 tataaataggacctacattgtcatgtaaagatatacttgtgaagagaataatacaaagtgttttcatcttcttcattctctttttgtttgatcttgtgca 10734175  T
Q  271 tttcctttatttcttaaca 289  Q
    ||| |||||||||||||||    
T  10734176 tttactttatttcttaaca 10734194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 289
Target Start/End: Original strand, 15007176 - 15007270
Alignment:
Q  194 tgtaaagatacatttgtgaagagaacaatagaaagtgttttcatcttctccttcctcctgttctttgatcttgtgtttttcctttatttcttaaca 289  Q
    |||||||| ||| | |||||||||  |||| |||||| ||||||||||||||||||| | |||||||||| |||| |||| ||||||||| |||||    
T  15007176 tgtaaagacacactggtgaagagat-aatacaaagtgctttcatcttctccttcctcatcttctttgatcctgtgcttttactttatttcataaca 15007270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 289
Target Start/End: Original strand, 17909897 - 17910016
Alignment:
Q  171 tataaataggactcatattgtattgtaaagat-acatttgtgaagagaacaatagaaagtgttttcatcttctccttcctcctgttctttgatcttgtgt 269  Q
    ||||||||||||| ||||   | ||||||||  ||| ||| |||||||| |||| |||||  ||||||||||||||||||| | || ||||||||||||     
T  17909897 tataaataggacttatatctcaatgtaaagaacacacttgagaagagaataatacaaagtactttcatcttctccttcctcatcttttttgatcttgtgc 17909996  T
Q  270 ttttcctttatttcttaaca 289  Q
    |||| |||||||| ||||||    
T  17909997 ttttactttattttttaaca 17910016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 210 - 289
Target Start/End: Complemental strand, 36911973 - 36911894
Alignment:
Q  210 tgaagagaacaatagaaagtgttttcatcttctccttcctcctgttctttgatcttgtgtttttcctttatttcttaaca 289  Q
    ||||||||| |||| |||||||||||| ||||| ||||||| | ||||||||||||||| ||||  |||||||| |||||    
T  36911973 tgaagagaataataaaaagtgttttcaccttcttcttcctcttcttctttgatcttgtgcttttagtttatttcataaca 36911894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 56
Target Start/End: Original strand, 10738947 - 10738976
Alignment:
Q  27 tcatggacattcaagggggagtgttatgaa 56  Q
    ||||||||||||||||||||||||||||||    
T  10738947 tcatggacattcaagggggagtgttatgaa 10738976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 28350632 - 28350580
Alignment:
Q  171 tataaataggactcatattgtattgtaaagatacatttgtgaagagaacaata 223  Q
    |||||||||||||||| || |  |||||||| ||||||||||||| |||||||    
T  28350632 tataaataggactcatgttttgatgtaaagagacatttgtgaagaaaacaata 28350580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 147 - 291
Target Start/End: Complemental strand, 8832640 - 8832496
Alignment:
Q  147 cacttacttacttatcttgtgtattataaataggactcatattgtattgtaaagatacatttgtgaagagaacaatagaaagtgttttcatcttctcctt 246  Q
    |||| ||||||| |||||||||| ||||||||||  ||||||||||||| ||||| ||| |  ||||||||| |||| |||||| ||||||| |||||||    
T  8832640 cactcacttactcatcttgtgtactataaatagggttcatattgtattgcaaagacacagtcttgaagagaataatacaaagtgatttcatcctctcctt 8832541  T
Q  247 cctcctgttctttgatcttgtgtttttcctttatttcttaacata 291  Q
    |||| | | ||||||||  ||| |||| ||||||||  |||||||    
T  8832540 cctcttctcctttgatcccgtgcttttactttattttataacata 8832496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 218
Target Start/End: Original strand, 39875817 - 39875906
Alignment:
Q  127 gaccttaatttccttgatcacacttacttacttatcttgtgtattataaataggactcatattgtattgtaaagatacatttgtgaagagaa 218  Q
    |||||||||| |||||||||| |  ||||||| |||||||||| ||||||||   ||| |||||||||| ||||| ||| ||||||||||||    
T  39875817 gaccttaattgccttgatcactc--acttactcatcttgtgtactataaataaagctcctattgtattgcaaagacacacttgtgaagagaa 39875906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 290
Target Start/End: Complemental strand, 44126795 - 44126675
Alignment:
Q  171 tataaataggactcatattgtattgtaaa-gatacatttgtgaagagaacaatagaaagtgttttcatcttctccttcctcctgttctttgatcttgtgt 269  Q
    ||||||||||||  |||||||| ||| || || ||| |||||||||||| |||| |||||  ||||||||||| ||| ||| | || ||||||||| ||     
T  44126795 tataaataggacctatattgtaatgtgaatgacacacttgtgaagagaataatacaaagtactttcatcttcttctttctcttcttatttgatcttatgc 44126696  T
Q  270 ttttcctttatttcttaacat 290  Q
    ||||  |||||||||||||||    
T  44126695 ttttaatttatttcttaacat 44126675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 39875693 - 39875744
Alignment:
Q  20 catatcctcatggacattcaagggggagtgttatgaaataaagacttagtgg 71  Q
    |||||||| |||||||| ||||| ||||||||||||||||| ||||||||||    
T  39875693 catatcctgatggacatccaaggaggagtgttatgaaataatgacttagtgg 39875744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 44122218 - 44122154
Alignment:
Q  19 gcatatcctcatggacattcaagggggagtgttatgaaataaagacttagtggatatccatcctt 83  Q
    ||||||||| |||||||| |||||||||||||||||||  | |  |||||||||| |||||||||    
T  44122218 gcatatcctgatggacatccaagggggagtgttatgaataataagcttagtggatgtccatcctt 44122154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 223
Target Start/End: Original strand, 19912233 - 19912439
Alignment:
Q  19 gcatatcctcatggacattcaagggggagtgttatgaaataaagacttagtggatatccatcct---tctt-caccttcctataaccccaattagtaagt 114  Q
    ||||||||| |||||||| |||||||||||||||||||  | ||||||||||||| |||| |||   |||| ||||||||||||||||| |||| | | |    
T  19912233 gcatatcctaatggacatccaagggggagtgttatgaataatagacttagtggatgtccacccttaatcttccaccttcctataacccctattattgaat 19912332  T
Q  115 gaatagttggtggaccttaatttccttgatcacacttacttacttatcttgtgtattataaataggactcatattgtattgt-aaagatacatttgtgaa 213  Q
    | || ||| || | |||||||| | |||||  |||| |||| || || ||||||  ||||||||||||  ||||| || ||| ||| ||||| |||||||    
T  19912333 gtatggttagtagtccttaattgctttgat--cactcacttgctcat-ttgtgtcctataaataggacctatattataatgtaaaatatacacttgtgaa 19912429  T
Q  214 gagaacaata 223  Q
    ||||| ||||    
T  19912430 gagaataata 19912439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 34111178 - 34111056
Alignment:
Q  19 gcatatcctcatggacattcaagggggagtgttatgaaataaagactt-agtggatatccatccttcttca----ccttcctataaccccaattagtaag 113  Q
    ||||||||| ||||||||  || |||||||||||||||  || || || ||||||| |||||||||  |||    |||||||||||| |  |||||| ||    
T  34111178 gcatatcctgatggacatcgaaaggggagtgttatgaataaatgattttagtggatgtccatccttaatcatccaccttcctataactcgcattagtgag 34111079  T
Q  114 tgaatagttggtggaccttaatt 136  Q
    ||||||||| |||||||||||||    
T  34111078 tgaatagttagtggaccttaatt 34111056  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 201 - 289
Target Start/End: Complemental strand, 23599988 - 23599900
Alignment:
Q  201 atacatttgtgaagagaacaatagaaagtgttttcatcttctccttcctcctgttctttgatcttgtgtttttcctttatttcttaaca 289  Q
    ||||| || ||||||||| |||| ||| || ||||||||||| |||| || | ||||||||||||||| ||||  ||||||||||||||    
T  23599988 atacacttatgaagagaataatacaaaatgctttcatcttcttcttcatcttcttctttgatcttgtgcttttagtttatttcttaaca 23599900  T

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