View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_17 (Length: 475)
Name: NF1435_low_17
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_17 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 113 - 475
Target Start/End: Original strand, 2124728 - 2125091
Alignment:
| Q |
113 |
gagagaaagaagttagaatttt-cttgtgaagaaaacctagaaaattactaatgtgatatttggtgcaggtgaactatgtaaatcctacagctccaccaa |
211 |
Q |
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| T |
2124728 |
gagagaaagaagttagaatttttcttgtgaagaaaacctagaaaattactaatgtgatatttggtgcaggtgaactatgtaaatcctacagctccaccaa |
2124827 |
T |
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| Q |
212 |
gtcctatagtaacaccaccttctccagtgaaggcaccaccaacaccacctttagttaaatcaccacctattgtgaaagcaccttctccaccattggtgaa |
311 |
Q |
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| T |
2124828 |
gtcctatagtaacaccaccttctccagtgaaggcaccaccaacaccacctttagttaaatcaccacctattgtgaaagcaccttctccaccattggtgaa |
2124927 |
T |
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| Q |
312 |
aacaccaccatatcaatcaccaccagtgaaaccaacaccaccaattgtgaaatcacctccttctccaccattggtaaaatcaccaccttatcaatcacca |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2124928 |
aacaccaccatatcaatcaccaccagtgaaaccaacaccacctattgtgaaatcacctccttctccaccattggtaaaatcaccaccttatcaatcacca |
2125027 |
T |
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| Q |
412 |
cctattgttaaggcaccttctccccctctagtgaaaccaactccacctattgtgaaatcacctc |
475 |
Q |
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| T |
2125028 |
cctattgttaaggcaccttctccccctctagtgaaaccaactccacctattgtgaaatcacctc |
2125091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 336 - 428
Target Start/End: Original strand, 2125057 - 2125149
Alignment:
| Q |
336 |
agtgaaaccaacaccaccaattgtgaaatcacctccttctccaccattggtaaaatcaccaccttatcaatcaccacctattgttaaggcacc |
428 |
Q |
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| T |
2125057 |
agtgaaaccaactccacctattgtgaaatcacctccttctcctcctttggtgaaaacaccaccttatcaatcaccacctatagtgaaggcacc |
2125149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 335
Target Start/End: Original strand, 2125070 - 2125134
Alignment:
| Q |
274 |
ccacctattgtgaaagcacct---tctccaccattggtgaaaacaccaccatatcaatcaccacc |
335 |
Q |
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| T |
2125070 |
ccacctattgtgaaatcacctccttctcctcctttggtgaaaacaccaccttatcaatcaccacc |
2125134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 94
Target Start/End: Original strand, 2124682 - 2124712
Alignment:
| Q |
64 |
tatacatacaatgagtgtctagaagttagca |
94 |
Q |
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| T |
2124682 |
tatacatacaatgagtgtctagaagttagca |
2124712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 2140170 - 2140208
Alignment:
| Q |
168 |
atatttggtgcaggtgaactatgtaaatcctacagctcc |
206 |
Q |
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| T |
2140170 |
atatttggtgcaggtgaactatgtaaaaccttcagctcc |
2140208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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