View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1435_low_18 (Length: 474)
Name: NF1435_low_18
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_18 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Original strand, 607822 - 608296
Alignment:
| Q |
1 |
tatcttttgtgacattggctcgtgtgtgttgttgctcgttgcgtcgtcgcttttaaggcttgtaacttgttttggagnnnnnnngtt-ggcatcatcatc |
99 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||| |
|
|
| T |
607822 |
tatcttttgtgacattgtctcgtgtgtgttgttgctcgttgcgtcgtcgcttttaaggcttgtaacttgttttggagtttttttgtttggcttcatcatc |
607921 |
T |
|
| Q |
100 |
gtctcctcatattcaacatatttgacaacgtgaaattagcgacgatctttcaccaaccaagcaatgtcattccttcacacaaaccttaaatgatgtgatt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
607922 |
gtctcctcatattcaacatatttgacaacgtgaaattagcgacgattcttcaccaaccaagcaatgtcattccttcacacaagccttaaatgatgtgatt |
608021 |
T |
|
| Q |
200 |
gatgttccttttagttccttttagcgagctcccaaaccttgtataaatggtgattcactattaagtaaaaattccgatgatttatatcaactagggtttg |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
608022 |
gatgttccttttagttccttttagcgagctcccaaaccttgtataaatggtgattcactattaattaaaaattccgatgatttatatcaactagggttgg |
608121 |
T |
|
| Q |
300 |
taaaacgcaagaacaaactacattgcaaagttacaatgcagaaggaggatacacttctaaaatcgaggacctttctatccaaattagcaaacttggaaga |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
608122 |
taaaacgcaagaacaaactacattgcaaagttacaatgcagaaggaggatacacttctaaaatcgaggacctttctatccaaattagcaaacttggaaga |
608221 |
T |
|
| Q |
400 |
tgcttctgaagaggatttgagaagcgcctgaatgtggaagcataacctcgacatcctagcattttgcatttgaac |
474 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
608222 |
tgcttttaaagaggatttgagaagcgcctgaatgtggaagcataacctcgacatcctagcatcttgcatttgaac |
608296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University