View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_19 (Length: 472)
Name: NF1435_low_19
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 35 - 459
Target Start/End: Complemental strand, 36986737 - 36986311
Alignment:
| Q |
35 |
caaagggtgacaaatgtgagcgaccaaaaatggctcagaaattctaaaatttgctatttgtaggaaatgaaaagaacatattttattttctacctg--ag |
132 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36986737 |
caaagggtgacaaatgtgagcgacgaaaaatggctcagaaattctaaagtttgctatttgtaggaaatgaaaagaacatattttattttctacctgtgag |
36986638 |
T |
|
| Q |
133 |
taagaaacttaatgataccaccctactctaaagtatatgtcttcagattgaattatcttctcccttgtatgcatgagtaatagccataaatatatgttga |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36986637 |
taagaaacttaatgataccaccctactctaaagtatatgtcttcagattgaattatcttctcccttgtatgcatgagtaatagccataaatatatgttga |
36986538 |
T |
|
| Q |
233 |
aaatgttcaaaaacagtgtgcgtattcctccgattatattggttggcttgcaggaagtacttggtctctatgctaatacttggatgttgcaggatattcc |
332 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36986537 |
aaatgttcaaaaacagtgtgagtattcctccgattatattggttggcttgcaggaagtacttggtctctatgctaatacttggatgttgcaggatattcc |
36986438 |
T |
|
| Q |
333 |
tgtcttgccgaaaattgggccaagtcaaaatgcatcattagccacagtggaaaccaatgtaacagcagaaagaaacagcgctggtggagaggttcctcag |
432 |
Q |
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| T |
36986437 |
tgtcttgccgaaaattgggccaagtcaaaatgcatcattagccacagtggaaaccaatgtaacagcagaaagaaacagcgctggtggagaggttcctcag |
36986338 |
T |
|
| Q |
433 |
agttctacttctacacagaaggaagtg |
459 |
Q |
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| T |
36986337 |
agttctacttctacacagaaggaagtg |
36986311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 163 - 440
Target Start/End: Complemental strand, 36980913 - 36980637
Alignment:
| Q |
163 |
aagtatatgtcttcagattgaattatcttctccctt-gtatgcatgagtaatag---ccataaatatatgttgaaaatgttcaaaaacagtgtgcgtatt |
258 |
Q |
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||||||| ||||||||||||||||| ||||||||| |||||||||||||||| || || ||||||||||||||||||| |||| || |||| |
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| T |
36980913 |
aagtatagatcttcagattgaattattttctccctttgtatgcatgagtaataataaccttagatatatgttgaaaatgttcgaaaa-----tgtttatt |
36980819 |
T |
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| Q |
259 |
cctccgattatattggttggcttgcaggaagtacttggtctctatgctaatacttggatgttgcaggatattcctgtcttgccgaaaattgggccaagtc |
358 |
Q |
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||| |||||||||| | ||||| | ||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||| |||||| ||||||||| |
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| T |
36980818 |
gttccaattatattgggttgcttgtatgaagtacttggtctctatgcttatatttggatgttgcaggatattcctgtcatgctaaaaattaggccaagtc |
36980719 |
T |
|
| Q |
359 |
aaaatgcatcattagccacagtggaaaccaatgtaacagcagaaagaaacagcgctggtggagaggttcctcagagttctac |
440 |
Q |
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| T |
36980718 |
aaaatgcatcatcagtcacagtggaaaccaaaggaacagcagagagtgaaagggctggtggagaagttcctcggagttctac |
36980637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 286 - 438
Target Start/End: Complemental strand, 36985330 - 36985178
Alignment:
| Q |
286 |
gaagtacttggtctctatgctaatacttggatgttgcaggatattcctgtcttgccgaaaattgggccaagtcaaaatgcatcattagccacagtggaaa |
385 |
Q |
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||||||||| |||||||||||| || ||||||||||||||||||||||||| | || |||||||||||||||||||||| ||||| |||| ||||||||| |
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| T |
36985330 |
gaagtacttagtctctatgctattatttggatgttgcaggatattcctgtcatacctaaaattgggccaagtcaaaatgaatcatcagcctcagtggaaa |
36985231 |
T |
|
| Q |
386 |
ccaatgtaacagcagaaagaaacagcgctggtggagaggttcctcagagttct |
438 |
Q |
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|||| | ||||| ||| | |||| ||||||||||||||||||||||||||| |
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| T |
36985230 |
ccaaaggaacagtagagggggacagggctggtggagaggttcctcagagttct |
36985178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 225 - 441
Target Start/End: Complemental strand, 36984742 - 36984535
Alignment:
| Q |
225 |
tatgttgaaaatgttcaaaaacagtgtgcgtattcctccgattatat-tggttggcttgcaggaagtacttggtctctatgctaatacttggatgttgca |
323 |
Q |
| |
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||||||||||||||||||||| || |||||| ||| ||||||| |||||||||||| |||||| || ||||||||||||||| ||||| || ||| |
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| T |
36984742 |
tatgttgaaaatgttcaaaaa----atgtgtattcttccaattatatcgggttggcttgcatgaagtatttagtctctatgctaatatttggaggtggca |
36984647 |
T |
|
| Q |
324 |
ggatattcctgtcttgccgaaaattgggccaagtcaaaatgcatcattagccacagtggaaaccaatgtaacagcagaaagaaacagcgctggtggagag |
423 |
Q |
| |
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|||||| | || |||| |||||| ||||||||| ||||||||| | |||||||||||||||||||| ||||||||| || ||| | ||||| |||| |
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| T |
36984646 |
ggatatcc---tcatgcctaaaatttggccaagtc-aaatgcatcgtcagccacagtggaaaccaatggaacagcagagtgacaca--gttggtgtagag |
36984553 |
T |
|
| Q |
424 |
gttcctcagagttctact |
441 |
Q |
| |
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||||| |||||||||||| |
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| T |
36984552 |
gttccacagagttctact |
36984535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 302 - 428
Target Start/End: Complemental strand, 36996650 - 36996524
Alignment:
| Q |
302 |
atgctaatacttggatgttgcaggatattcctgtcttgccgaaaattgggccaagtcaaaatgcatcattagccacagtggaaaccaatgtaacagcaga |
401 |
Q |
| |
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|||| |||| ||||||||| ||||||||||||||| | || ||||||||||||||||||||||||||| || |||||||||||| || | ||||||||| |
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| T |
36996650 |
atgcaaatatttggatgtttcaggatattcctgtcattcctgaaattgggccaagtcaaaatgcatcatcagtcacagtggaaactaaaggaacagcaga |
36996551 |
T |
|
| Q |
402 |
aagaaacagcgctggtggagaggttcc |
428 |
Q |
| |
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|| |||| |||||||||||| |||| |
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| T |
36996550 |
gagtgacagagctggtggagagtttcc |
36996524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 319 - 399
Target Start/End: Complemental strand, 36979168 - 36979088
Alignment:
| Q |
319 |
ttgcaggatattcctgtcttgccgaaaattgggccaagtcaaaatgcatcattagccacagtggaaaccaatgtaacagca |
399 |
Q |
| |
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|||||||||| ||||||| |||| ||||||| | |||||||||||||||||| ||||||||| ||||| || | ||||||| |
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| T |
36979168 |
ttgcaggataatcctgtcatgcctaaaattgcgtcaagtcaaaatgcatcatcagccacagtagaaactaaaggaacagca |
36979088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 459
Target Start/End: Complemental strand, 36979937 - 36979890
Alignment:
| Q |
412 |
gctggtggagaggttcctcagagttctacttctacacagaaggaagtg |
459 |
Q |
| |
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||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
36979937 |
gctggtggagaggttcctccgagttctactgctacacagaaggaagtg |
36979890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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