View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_2 (Length: 684)
Name: NF1435_low_2
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 532; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 9 - 664
Target Start/End: Original strand, 33062277 - 33062923
Alignment:
| Q |
9 |
gataatactagtatggtagaagtccaaatccaacatgtaggaacaacaaacaactaagcaagaatatacaatatttcaccatcaaaccatggatgacaac |
108 |
Q |
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| T |
33062277 |
gataatactagtatg-tagaagtccaaatccaacatgtaggaacaacaaacaactaagcaagaatatacaatatttcaccatcaaaccatggatgacaac |
33062375 |
T |
|
| Q |
109 |
atccacatgtcaagttgagttaaatttgtatctagtgtatatatctttttgtgtataatatgaataatgttctaaaaatatatttatatagataatgatg |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33062376 |
atccacatgtcaagttgagttaaatttgtatctagtgtatatatctttttgtgtataatatgaataatgttctaaaaatatgtttatatagataatgatg |
33062475 |
T |
|
| Q |
209 |
caagaggaagaaaattggagtcagagaaacccagagtgaat-agtatttcataaacaatatttcatatcaagaaaaattaataagctcggtgacatcatt |
307 |
Q |
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| T |
33062476 |
caagaggaagaaaattggagtcagagaaacccagagtgaatgggtatttcataaacaatatttcatatcaagaaaaattaataagctcggtgacatcatt |
33062575 |
T |
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| Q |
308 |
ttgtatctaatacattttatggctcaatcttggctaaaacatgtagtatttgactttttcaaatatttgcattaaatatgagcctagtctggtttggtag |
407 |
Q |
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||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33062576 |
ttgcatctaatacattatatggctcaatcttggctaaaacatgtagtatttgattttttcaaatatttgcattaaatatgagcctagtctggttcggtag |
33062675 |
T |
|
| Q |
408 |
gcttaattgggagagccaaaatgttcaaannnnnnngattgtataatttaggaactcaagttagtctaaaagatgagctcattgagctagacaaaaattg |
507 |
Q |
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| T |
33062676 |
gcttaattgggagagccaaaatgttcaaatttttttgattgtataatttaggaactcaagttagtctaaaagatgagctcattgagctagacaaaaattg |
33062775 |
T |
|
| Q |
508 |
acatcattgacacatacgtatagaaggttaggacattgtttatcctccaccttcattattgaaaaacccatatgtttttggaagtgcacactcaaaccac |
607 |
Q |
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| T |
33062776 |
acatcattgacacatacgtataaaaggttagggcattgttttatctccaccctcattattgaaaaacacatatgtttttggaagtgca---------cac |
33062866 |
T |
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| Q |
608 |
acaaattgtctgaaagtgcacactcaacccatatgtttttcgaaaacatgtatctaa |
664 |
Q |
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| T |
33062867 |
acaaattgtctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaa |
33062923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 523 - 660
Target Start/End: Original strand, 33083368 - 33083504
Alignment:
| Q |
523 |
acgtatagaaggttaggacattgtttatcctccaccttcattattgaaaaacccatatgtttttggaagtgcacactcaaaccacacaaattgtctgaaa |
622 |
Q |
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||||||| ||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| |
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| T |
33083368 |
acgtataaaaggttagggcattgtttatc-tccaccctcattattgaaaaacccatatgtttttagaagtgcacactcaaaccacataaattgtttgaaa |
33083466 |
T |
|
| Q |
623 |
gtgcacactcaacccatatgtttttcgaaaacatgtat |
660 |
Q |
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|||||||||||||||||||||||| | ||||||||||| |
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| T |
33083467 |
gtgcacactcaacccatatgttttacaaaaacatgtat |
33083504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 356 - 435
Target Start/End: Original strand, 33083249 - 33083328
Alignment:
| Q |
356 |
tttgactttttcaaatatttgcattaaatatgagcctagtctggtttggtaggcttaattgggagagccaaaatgttcaa |
435 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||| |
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| T |
33083249 |
tttgactttttcaactgtttgcattaaatatgagcctagtctgattcggtaggcttaattggtagagccaaaatgttcaa |
33083328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 604 - 664
Target Start/End: Original strand, 33063958 - 33064018
Alignment:
| Q |
604 |
ccacacaaattgtctgaaagtgcacactcaacccatatgtttttcgaaaacatgtatctaa |
664 |
Q |
| |
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| T |
33063958 |
ccacacaaattgtctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaa |
33064018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 604 - 664
Target Start/End: Original strand, 33065044 - 33065104
Alignment:
| Q |
604 |
ccacacaaattgtctgaaagtgcacactcaacccatatgtttttcgaaaacatgtatctaa |
664 |
Q |
| |
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| T |
33065044 |
ccacacaaattgtctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaa |
33065104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 604 - 664
Target Start/End: Original strand, 33067204 - 33067264
Alignment:
| Q |
604 |
ccacacaaattgtctgaaagtgcacactcaacccatatgtttttcgaaaacatgtatctaa |
664 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33067204 |
ccacacaaattgtctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaa |
33067264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 604 - 664
Target Start/End: Original strand, 33069342 - 33069402
Alignment:
| Q |
604 |
ccacacaaattgtctgaaagtgcacactcaacccatatgtttttcgaaaacatgtatctaa |
664 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33069342 |
ccacacaaattgtctgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaa |
33069402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 33081689 - 33081748
Alignment:
| Q |
17 |
tagtatggtagaagtccaaatccaacatgtaggaacaacaaacaactaagcaagaatata |
76 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33081689 |
tagtatagtagaagtccaaatccaacatgtaggaacaacaaacaactaagcaagaatata |
33081748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 196 - 307
Target Start/End: Original strand, 33081782 - 33081894
Alignment:
| Q |
196 |
atagataatgatgcaagaggaagaaaattggagtcagagaaacccagagtgaatagtatttcataaacaata---tttcatatcaagaaaaattaataag |
292 |
Q |
| |
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||||||||| |||||||||||||| ||| ||||||||| || |||||| ||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33081782 |
atagataataatgcaagaggaagagaatcggagtcaga--aagtcagagtaaatggtatttcataaacaatagtatttcatatcaagaaaaattaataag |
33081879 |
T |
|
| Q |
293 |
ctcggtgacatcatt |
307 |
Q |
| |
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|| ||||||||||| |
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| T |
33081880 |
atcagtgacatcatt |
33081894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 604 - 664
Target Start/End: Original strand, 33066118 - 33066178
Alignment:
| Q |
604 |
ccacacaaattgtctgaaagtgcacactcaacccatatgtttttcgaaaacatgtatctaa |
664 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33066118 |
ccacacaaattgtttgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaa |
33066178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 604 - 664
Target Start/End: Original strand, 33068256 - 33068316
Alignment:
| Q |
604 |
ccacacaaattgtctgaaagtgcacactcaacccatatgtttttcgaaaacatgtatctaa |
664 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33068256 |
ccacacaaattgtttgaaagtgcacactcaacccatatgtttttcaaaaacatgtatctaa |
33068316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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