View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_20 (Length: 469)
Name: NF1435_low_20
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 9 - 453
Target Start/End: Original strand, 55455978 - 55456422
Alignment:
| Q |
9 |
agcagagaaatatttagctgaaataatctttccattgcaagaaccaggtgggaaatgtggaccagtctcacaagcaccagaaaagtgagagatatttgaa |
108 |
Q |
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| T |
55455978 |
agcagagaaatatttagctgaaataatctttccattgcaagaaccaggtgggaaatgtggaccagtctcacaagcaccagaaaagtgagagatatttgaa |
55456077 |
T |
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| Q |
109 |
gtgaaaggttggtaagcaaagcttggatgaattggattaatgccactatcaacaataccaataacaattccatcacctgcatttttgtcacctccttctt |
208 |
Q |
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| T |
55456078 |
gtgaaaggttggtaagcaaagcttggatgaattggattaatgccactatcaacaataccaataacaattccatcacctgcatttttgtcacctcctactt |
55456177 |
T |
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| Q |
209 |
gtgcccataatccttttggtaagttaagaaagtcaggagtgtatgttgtcatcagtttcactcctctatctttctctactaacttcactcctggtgtagc |
308 |
Q |
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| T |
55456178 |
gtgcccataatccttttggcaagttaagaaaatcaggagtgtatgttgtcatcagtttcactcctctatctttctctactaacttcactcctggtgtagc |
55456277 |
T |
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| Q |
309 |
tcttagtctttttgcctgatatatttggcaatggattcaataactttagtgcatgcatgtactatataaaaatgattgaaatggatatggagatgaacct |
408 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55456278 |
tcttagtctttttgcctgatatttttggcaatggattcaataactttagtgcatgcatgtactatataaaaatgattgaaatggatatggagatgaacct |
55456377 |
T |
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| Q |
409 |
gggaaggggttgtgtgaacagagaagccattaattatgtgtttat |
453 |
Q |
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| T |
55456378 |
gggaaggggttgtgtgaacagagaagccattaattatgtgtttat |
55456422 |
T |
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