View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_22 (Length: 448)
Name: NF1435_low_22
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 76 - 440
Target Start/End: Original strand, 42248977 - 42249341
Alignment:
| Q |
76 |
ttcaccaacctatgcaatatggtatta-atgaaagactttgtgattcaatatttagtcattcagcttgacacaaatccacggatgtttttgagaaagagg |
174 |
Q |
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| T |
42248977 |
ttcaccaacctatgcaatatt-tagtatatgaaagactttgtgattcaatatttagtcattcagcttgacacaaatccacggatgtttttgagaaagagg |
42249075 |
T |
|
| Q |
175 |
aggtgaagattttagagtgagctgaaaaatgacttttaaaaaatttatatgaacaattgcaatttcagtattattattaaattgtaattaaatttggatg |
274 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42249076 |
aggtgaagattttagagtgagctcaaaaatgacttttaaaaaatttatatgaacaattgcaatttcagtattattattaaattgtaattaaatttggatg |
42249175 |
T |
|
| Q |
275 |
taaccaaataactttggggtgtgaaaataaaatattgtcggattttataaaagtcaaaaacgtatttaaccgtttattttattttctaagaaattgccca |
374 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42249176 |
taaccaaataactttggggtgtgaaaataaaaaattgtcagattttataaaagtcaaaaacgtatttaaccgtttattttattttctaagaaattggcca |
42249275 |
T |
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| Q |
375 |
ttaatccagtgcctatatccggaaaaccacctctccatgtcttagaacgcacagttgttgatgatg |
440 |
Q |
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| T |
42249276 |
ttaatccagtgcctatatccggaaaaccacctctccatgtcttagaacgcacagttgttgaggatg |
42249341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 50061085 - 50061149
Alignment:
| Q |
234 |
caatttcagtattattattaaattgtaattaaatttggatgtaaccaaataactttggggtgtga |
298 |
Q |
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| T |
50061085 |
caatttcaatattattattaaattttaattaaatttggatgtaaccaaatatttttgaggtgtga |
50061149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 208 - 278
Target Start/End: Original strand, 5609186 - 5609256
Alignment:
| Q |
208 |
ttttaaaaaatttatatgaacaattgcaatttcagtattattattaaattgtaattaaatttggatgtaac |
278 |
Q |
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| T |
5609186 |
ttttaataaatttatacgaacaatgacaatttcagtattattaataaattttaattaactttggatgtaac |
5609256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 271
Target Start/End: Original strand, 5256465 - 5256584
Alignment:
| Q |
155 |
ggatgtttttgagaaagaggaggtgaagattttagagt--gagctgaaaaatgacttttaaaaaatttatatgaacaattgcaa-tttcagtattattat |
251 |
Q |
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|||||||||||| | || ||||||||| |||||||| ||| |||||||||| |||| |||||||||||||||||| |||| ||| ||| ||| || |
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| T |
5256465 |
ggatgtttttgatagaggggaggtgaaaattttagatacagagatgaaaaatgatttttgaaaaatttatatgaacaagggcaattttgggtaatataat |
5256564 |
T |
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| Q |
252 |
taaattgtaattaaatttgg |
271 |
Q |
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| T |
5256565 |
taaattttatttaaatttgg |
5256584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 44095112 - 44095047
Alignment:
| Q |
208 |
ttttaaaaaatttatatgaacaattgcaatttcagtattattattaaattgtaattaaatttggat |
273 |
Q |
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|||| ||||| ||||||||||||| |||||||| |||||| ||| |||| |||||||| |||||| |
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| T |
44095112 |
ttttgaaaaacttatatgaacaatgacaatttcaatattatcatttaattttaattaaaattggat |
44095047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 283
Target Start/End: Original strand, 47777884 - 47777931
Alignment:
| Q |
235 |
aatttcagtattattattaaattgtaattaaatttggatgtaaccaaat |
283 |
Q |
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| T |
47777884 |
aatttcagtattatcatcaaatt-taattaaatttgggtgtaaccaaat |
47777931 |
T |
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