View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_25 (Length: 437)
Name: NF1435_low_25
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 391
Target Start/End: Complemental strand, 37351613 - 37351244
Alignment:
| Q |
19 |
gcggggtctttattgcaaccatttatgaatatattcttcattaatcactggccagcaagaggtaggagaacaaactagtaatatttaaatttgagactct |
118 |
Q |
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| T |
37351613 |
gcggggtctttattgcaaccatttatgaatatattcttcattaatcactggccagcaagaggtaggagaacaaactagtaatatttaaatttgagactct |
37351514 |
T |
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| Q |
119 |
ttcnnnnnnngattaaacaattttttaggatagaaggaagcttgcagaagtatctttcgtgattctttgttttaattttcttcttgcttgagtaaagtat |
218 |
Q |
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| T |
37351513 |
ttctttt---gattaaacaattttttaggatagaaggaagcttgcagaagtatctttcgtgattctttgttttaattttcttcttgcttgagtaaagtat |
37351417 |
T |
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| Q |
219 |
taagtatattatattatcaatcattaaacacattcgccgaataaatgtatctattgtttactcaatcataggagaatccccaaagaagactaatattgtt |
318 |
Q |
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| T |
37351416 |
taagtatattatattatcaatcattaaacacattcgccgaataaatgtatctattgtttactcaatcataggagaatccccaaagaagactaatattgtt |
37351317 |
T |
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| Q |
319 |
caagagaatcacacaacataactggattaatatatatttaacttaatattggggaaaattcaagtatcagatt |
391 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37351316 |
caagagaatcacacagcataactggattaatatatatttaacttaatattggggaaaattcaagtatcagatt |
37351244 |
T |
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