View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1435_low_26 (Length: 432)

Name: NF1435_low_26
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1435_low_26
NF1435_low_26
[»] scaffold0667 (2 HSPs)
scaffold0667 (101-417)||(4135-4443)
scaffold0667 (1-102)||(3801-3902)
[»] chr2 (28 HSPs)
chr2 (100-368)||(9320660-9320926)
chr2 (187-417)||(9291685-9291915)
chr2 (188-387)||(12012731-12012927)
chr2 (101-368)||(9328280-9328543)
chr2 (188-374)||(11987679-11987865)
chr2 (101-370)||(9315709-9315965)
chr2 (215-417)||(8573675-8573877)
chr2 (109-370)||(9284386-9284639)
chr2 (201-417)||(9274277-9274493)
chr2 (188-387)||(12006297-12006496)
chr2 (188-392)||(12019062-12019266)
chr2 (215-417)||(10347552-10347757)
chr2 (133-417)||(9065763-9066035)
chr2 (217-370)||(10335649-10335802)
chr2 (101-367)||(9061358-9061618)
chr2 (215-387)||(10371625-10371800)
chr2 (194-360)||(10352879-10353045)
chr2 (195-302)||(7115933-7116040)
chr2 (311-417)||(16268955-16269061)
chr2 (215-365)||(10341140-10341293)
chr2 (5-102)||(9320390-9320487)
chr2 (101-286)||(9294920-9295097)
chr2 (18-102)||(9328002-9328086)
chr2 (248-370)||(8579701-8579823)
chr2 (104-177)||(10371532-10371604)
chr2 (311-367)||(7115844-7115900)
chr2 (238-298)||(9364442-9364502)
chr2 (107-166)||(12019264-12019323)
[»] chr3 (1 HSPs)
chr3 (203-417)||(37462244-37462461)
[»] chr8 (1 HSPs)
chr8 (246-363)||(41966911-41967028)
[»] chr1 (7 HSPs)
chr1 (260-368)||(29453502-29453610)
chr1 (260-368)||(29423101-29423209)
chr1 (260-368)||(29467978-29468086)
chr1 (109-177)||(29453663-29453730)
chr1 (126-208)||(29468117-29468199)
chr1 (311-368)||(29443519-29443576)
chr1 (108-177)||(29443680-29443748)
[»] chr7 (2 HSPs)
chr7 (311-367)||(45230295-45230351)
chr7 (311-378)||(45243557-45243624)


Alignment Details
Target: scaffold0667 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 101 - 417
Target Start/End: Original strand, 4135 - 4443
Alignment:
Q  101 tagcacagagtttaactgcataaaccatatgatgggtccattgaactggatattaactaatacatagcaaaaactcaataaactaggataatgaataaaa 200  Q
    |||||||||||||||||  ||||| ||||||||||||||||||||| | ||||||||| ||||| |||||||||| || ||||| | ||||| |||||      
T  4135 tagcacagagtttaactaaataaatcatatgatgggtccattgaacag-atattaacttatacacagcaaaaactgaaaaaactcg-ataatcaataa-- 4230  T
Q  201 agtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctcc 300  Q
     |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4231 -gtaccttttcttgctcttgcatgtatgattctccttcttactagaattatcaacaggaaaggaaggtggtacaagacttccaacacaaatcttagctcc 4329  T
Q  301 atcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttatgatgtacctccaacaatacctcaattcct 400  Q
    || |||||| |||||| |||   ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  4330 attgaaatcaggaatttctt---cataactaacttgttcagtcttcaaatcataccaaaacagcttcttatgatgcacctccaacaaaacctcaattcct 4426  T
Q  401 tctaacagaaccttact 417  Q
    || | ||||||||||||    
T  4427 tcaatcagaaccttact 4443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 3801 - 3902
Alignment:
Q  1 aataaaagacattttgccattaggatgaggcaagtacataaaatgacatgacgcaaagagaagaatgcgctgtcacattgcataaattgttgtcaattca 100  Q
    |||||||| |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||  |||||||||||||||| |||||||||||||||    
T  3801 aataaaagtcattttgccattaggatgaggcaagttcatgaaatgacatgatgcaaagagaagaatttgctgtcacattgcatacattgttgtcaattca 3900  T
Q  101 ta 102  Q
    ||    
T  3901 ta 3902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 145; Significance: 4e-76; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 100 - 368
Target Start/End: Original strand, 9320660 - 9320926
Alignment:
Q  100 atagcacagagtttaactgcataaaccatatgatgggtccattgaactggatattaactaatacatagcaaaaactcaataaactaggataatgaataaa 199  Q
    |||||| |||||||||||  ||| | |||||||||||||||||||| || | || |||||||||||||||||||||||| ||||||| ||||| || ||     
T  9320660 atagcatagagtttaacttaatatatcatatgatgggtccattgaattg-acatcaactaatacatagcaaaaactcaaaaaactagtataatcaa-aac 9320757  T
Q  200 aagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctc 299  Q
    ||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||| || | || |||    
T  9320758 aagtaccttctcatgctcttgcttgtacgattctccttcttcttagaattatcaacagggaaggaaggtgggacaagacttccaacacaaaacataactc 9320857  T
Q  300 catcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttct 368  Q
    ||| |||||| ||||||||||||||||||||||||||| || | |||||||||||||||||||||||||    
T  9320858 catggaaatcaggaattccttcaacataactaacttgtgcactcttcaaatcataccaaaacagcttct 9320926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 187 - 417
Target Start/End: Original strand, 9291685 - 9291915
Alignment:
Q  187 gataatgaataaaaagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaaca 286  Q
    |||||| ||||| ||||||| |||||| |||||| | ||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| |||||    
T  9291685 gataatcaataagaagtaccgtttctttctcttgttcgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtagaagactttcaaca 9291784  T
Q  287 ctaatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttatgatgtacctccaaca 386  Q
    | |||| ||||| |||| ||||  |||||||||||||||||||||| ||||||| | |||||||||||||||||||||||| |||||| |||||||||||    
T  9291785 caaatcatagcttcatccaaattaggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacagcttcctatgatttacctccaaca 9291884  T
Q  387 atacctcaattccttctaacagaaccttact 417  Q
    | |||| | |||| || ||||||||||||||    
T  9291885 aaacctgagttccgtccaacagaaccttact 9291915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 188 - 387
Target Start/End: Complemental strand, 12012927 - 12012731
Alignment:
Q  188 ataatgaataaaaagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacac 287  Q
    ||||| ||||| ||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  12012927 ataatcaataagaagtaccttctcttgctcttgcttgaatgattccccttcttcctagaattatcaacagggaaggagggtggtacaagacttccaacac 12012828  T
Q  288 taatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttatgatgtacctccaacaa 387  Q
     |||| ||||| |||||||||  ||||||||||||||||||||||||||   | | |||||||||||||||| |||||||||||||| ||||||||||||    
T  12012827 aaatcatagcttcatcgaaattaggaattccttcaacataactaacttg---actcttcaaatcataccaaaccagcttcttatgatttacctccaacaa 12012731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 101 - 368
Target Start/End: Original strand, 9328280 - 9328543
Alignment:
Q  101 tagcacagagtttaactgcataaaccatatgatgggtccattgaactggatattaactaatacatagcaaaaactcaataaactaggataatgaataaaa 200  Q
    ||||| ||||||||||| |||| | ||||||| |||||||||||| || | || |||| ||||||||||||||||||| |||||   ||||| || || |    
T  9328280 tagcatagagtttaacttcatatatcatatgacgggtccattgaattg-acatcaacttatacatagcaaaaactcaaaaaactc--ataatcaa-aaga 9328375  T
Q  201 agtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctcc 300  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  || | || |  |    
T  9328376 agtaccttctcttgctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaacagaaaacataacatc 9328475  T
Q  301 atcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttct 368  Q
    || |||||| ||||||||||||||||||||||||||| || |  | ||||||||| ||||||||||||    
T  9328476 atggaaatcaggaattccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagcttct 9328543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 188 - 374
Target Start/End: Complemental strand, 11987865 - 11987679
Alignment:
Q  188 ataatgaataaaaagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacac 287  Q
    ||||| ||||| ||||||||| ||||| ||||||||| ||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  11987865 ataatcaataagaagtaccttctcttggtcttgcttgaatgattccccttcttcctagaattatcaacagggaaggagggtggtacaagacttccaacac 11987766  T
Q  288 taatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttatgat 374  Q
     |||| ||||| ||||||| |  |||||||| ||||||||||||| ||||||| | |||||||||||||||| ||||||||| ||||    
T  11987765 aaatcatagcttcatcgaatttaggaattccgtcaacataactaaattgttcactcttcaaatcataccaaaccagcttcttgtgat 11987679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 101 - 370
Target Start/End: Original strand, 9315709 - 9315965
Alignment:
Q  101 tagcacagagtttaactgcataaaccatatgatgggtccattgaactggatattaactaatacatagcaaaaactcaataaactaggataatgaataaaa 200  Q
    ||||| ||||||||||| | || | ||||||||||||||||||||||| | ||||||| |||||||||||||||||||         |||||  ||||      
T  9315709 tagcatagagtttaactacttatatcatatgatgggtccattgaactg-acattaacttatacatagcaaaaactcaa---------ataatatataa-- 9315796  T
Q  201 agtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctcc 300  Q
     ||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||||| |||| ||||| |    
T  9315797 -gtaccttctcttgttcttgcttgtatgattctccttcttcctacaataatcaacagggaaggaaggtggtacaagactttcaacacaaatcatagcttc 9315895  T
Q  301 atcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttctta 370  Q
    ||| ||||  | |||||||||||||||| ||||||||||| |  |||| ||| |||||||||||||||||    
T  9315896 atccaaattagaaattccttcaacataaataacttgttcactcatcaagtcacaccaaaacagcttctta 9315965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 215 - 417
Target Start/End: Complemental strand, 8573877 - 8573675
Alignment:
Q  215 ctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaa 314  Q
    ||||||||||||  |||||||| ||||||| ||||||||||||| ||| |||||||||||||||||||||||| || | ||||| |||   |||  ||||    
T  8573877 ctcttgcttgtacaattctcctccttcctacaattatcaacagggaagaaaggtggtacaagacttccaacacaaaacatagctgcattccaattaggaa 8573778  T
Q  315 ttccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttatgatgtacctccaacaatacctcaattccttctaacagaacctt 414  Q
    |||||||||||||||| ||||||||| | |||||||||||||||||||||||| |||||  ||||||| |||| || ||||||||||| |||||||||||    
T  8573777 ttccttcaacataactgacttgttcactcttcaaatcataccaaaacagcttcctatgacatacctccgacaaaacttcaattccttccaacagaacctt 8573678  T
Q  415 act 417  Q
    |||    
T  8573677 act 8573675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 109 - 370
Target Start/End: Complemental strand, 9284639 - 9284386
Alignment:
Q  109 agtttaactgcataaaccatatgatgggtccattgaactggatattaactaatacatagcaaaaactcaataaactaggataatgaataaa-aagtacct 207  Q
    ||||||||| ||||||  |||||||||||||||| ||||  | ||||||| ||||| ||||||||        |||  |||||| |||||| ||||||||    
T  9284639 agtttaactacataaattatatgatgggtccattaaactaaa-attaacttatacaaagcaaaaa--------actcagataatcaataaagaagtacct 9284549  T
Q  208 tttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctccatcgaaa 307  Q
    | ||||||||||||||  | ||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| |||||| |||| ||||| |||| |||    
T  9284548 tctcttgctcttgcttaaacgattctccttcttactagaattatcaacagggaaggaaggtggcacaagactttcaacacaaatcatagcttcatccaaa 9284449  T
Q  308 tcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttctta 370  Q
    |  |||||||||||||||||| ||||||| ||| | |||||||||||||||| ||||||||||    
T  9284448 ttaggaattccttcaacataaataacttgctcactcttcaaatcataccaaaccagcttctta 9284386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 201 - 417
Target Start/End: Original strand, 9274277 - 9274493
Alignment:
Q  201 agtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctcc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| | |||  ||| |||    
T  9274277 agtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacagggaaggagggtggtacaaaacttccaacccaaataatagttcc 9274376  T
Q  301 atcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttatgatgtacctccaacaatacctcaattcct 400  Q
    || ||| |  |||||||||| |||| |||||||||||||| | |||||||||||||||| ||| ||| ||| || | |||||    | || | |||||||    
T  9274377 attgaagttaggaattcctttaacaaaactaacttgttcactcttcaaatcataccaaatcaggttcctattatttccctccgttgaaacatgaattcct 9274476  T
Q  401 tctaacagaaccttact 417  Q
    || ||||||||||||||    
T  9274477 tccaacagaaccttact 9274493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 188 - 387
Target Start/End: Complemental strand, 12006496 - 12006297
Alignment:
Q  188 ataatgaataaaaagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacac 287  Q
    ||||| ||||| ||||||||| ||||||||||||||||| |||||||||||||| || |||| |||||||| ||||||||  ||||||||||||||||||    
T  12006496 ataatcaataagaagtaccttctcttgctcttgcttgtacgattctccttcttcgtacaattctcaacagggaaggaaggcagtacaagacttccaacac 12006397  T
Q  288 taatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttatgatgtacctccaacaa 387  Q
     |||| | ||| |||||||||  |||||||| ||||  ||| |||||| |||| | |||||||||||||||| |||||||||||||| |||||| |||||    
T  12006396 aaatcatcgcttcatcgaaatttggaattccctcaatgtaattaacttcttcactcttcaaatcataccaaaccagcttcttatgatttacctcaaacaa 12006297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 188 - 392
Target Start/End: Complemental strand, 12019266 - 12019062
Alignment:
Q  188 ataatgaataaaaagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacac 287  Q
    ||||| ||||| ||||||||| |||||||||| |||||| ||||||||||| |   |  || |||| |||| ||||||||||||||||||||||||||||    
T  12019266 ataatcaataagaagtaccttctcttgctctttcttgtacgattctccttcgtatgattatcatcagcaggtaaggaaggtggtacaagacttccaacac 12019167  T
Q  288 taatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttatgatgtacctccaacaa 387  Q
     |||| | ||| |||||||||  |||||||||||||||||||||||||| | | | |||||||||||||||| |||| | ||||||| ||| ||||||||    
T  12019166 aaatcatggcttcatcgaaattaggaattccttcaacataactaacttgctgactcttcaaatcataccaaaccagcatattatgatttacatccaacaa 12019067  T
Q  388 tacct 392  Q
     ||||    
T  12019066 aacct 12019062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 215 - 417
Target Start/End: Original strand, 10347552 - 10347757
Alignment:
Q  215 ctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcggga- 313  Q
    |||||||||| |||||||||||||||||||  |||||||||||| ||||||||||| |||||||||||||||| || | ||| | |||  | ||  |||     
T  10347552 ctcttgcttggatgattctccttcttcctacgattatcaacagggaaggaaggtgggacaagacttccaacacaaaacatagtttcattcatattaggag 10347651  T
Q  314 --attccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttatgatgtacctccaacaatacctcaattccttctaacagaac 411  Q
      ||||||||||||||||||| ||||||| | |||||||||||||||||||||||| |||| |||||||||||||| || | |  || ||| ||||||||    
T  10347652 gaattccttcaacataactaatttgttcactcttcaaatcataccaaaacagcttcctatgttgtacctccaacaaaacatgagctctttccaacagaac 10347751  T
Q  412 cttact 417  Q
    ||||||    
T  10347752 cttact 10347757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 133 - 417
Target Start/End: Complemental strand, 9066035 - 9065763
Alignment:
Q  133 tgggtccattgaactggatattaactaatacatagcaaaaactcaataaactaggataatgaataaaaagtaccttttcttgctcttgcttgtatgattc 232  Q
    |||||||||||||||| |||||||||  |||| ||||| |||||||  ||||  || ||| ||||| |||||||||      |||||| ||||  |||||    
T  9066035 tgggtccattgaactg-atattaacttgtacaaagcaagaactcaa--aacttagaaaataaataagaagtacctt------ctcttggttgttcgattc 9065945  T
Q  233 tccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaattccttcaacataactaa 332  Q
    ||||||   ||| ||||||||||||| ||||||| ||||||||||||| |||||| ||||  ||   |||   |||  |||| ||||||||||||| |||    
T  9065944 tccttc---ctacaattatcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaactccttcaacataaataa 9065848  T
Q  333 cttgttcagtattcaaatcataccaaaacagcttcttatgatgtacctccaacaatacctcaattccttctaacagaaccttact 417  Q
    |||||||| | ||||||||||||||||| ||||||| ||||| |||||||||||| ||||||||| |||| ||||||||||||||    
T  9065847 cttgttcactcttcaaatcataccaaaagagcttctgatgatctacctccaacaaaacctcaattgcttccaacagaaccttact 9065763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 217 - 370
Target Start/End: Original strand, 10335649 - 10335802
Alignment:
Q  217 cttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaatt 316  Q
    |||||||||| |||||| ||||||||||  |||||||||||| ||||||||||  |||||||||||||||| |||| |||   |||| ||||  ||||||    
T  10335649 cttgcttgtacgattctgcttcttcctacgattatcaacaggtaaggaaggtgaaacaagacttccaacacaaatcatagtgtcatccaaattaggaatt 10335748  T
Q  317 ccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttctta 370  Q
    |||||||||||||||| ||||||| | ||||||||||||||||||| |||||||    
T  10335749 ccttcaacataactaatttgttcactcttcaaatcataccaaaacaacttctta 10335802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 101 - 367
Target Start/End: Complemental strand, 9061618 - 9061358
Alignment:
Q  101 tagcacagagtttaactgcataaaccatatgatgggtccattgaactggatattaactaatacatagcaaaaactcaataaa---ctaggataatgaata 197  Q
    ||||| ||||||||||| |||| |  |||||||||  ||||||||||| | || |||| ||||||||||||||||||| |||   ||   ||||| ||||    
T  9061618 tagcatagagtttaactacatatattatatgatgg--ccattgaactg-acatcaacttatacatagcaaaaactcaaaaaaaaactcatataatcaata 9061522  T
Q  198 aaaagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagc 297  Q
    |   ||||||| ||||| ||||||||||| ||||||||||||| | ||   |||||||||| ||| |||||| ||| ||||||||||||  || | ||||    
T  9061521 a---gtaccttctcttggtcttgcttgtacgattctccttcttacaag---tatcaacagggaagaaaggtgatacgagacttccaacataaaacatagc 9061428  T
Q  298 tccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttc 367  Q
    | |||| ||||  |||||||||||||||||||||||||||||| | || | |||||||||||||||||||    
T  9061427 ttcatcaaaattaggaattccttcaacataactaacttgttcactcttgagatcataccaaaacagcttc 9061358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 215 - 387
Target Start/End: Original strand, 10371625 - 10371800
Alignment:
Q  215 ctcttgcttgtatgattctccttcttcctagaattatcaaca-ggaaaggaag--gtggtacaagacttccaacactaatcttagctccatcgaaatcgg 311  Q
    ||||||||||||||||||||||||||||||  |||||||||| || ||||  |  ||||||||||||| ||||||| || | ||||  |||| ||||  |    
T  10371625 ctcttgcttgtatgattctccttcttcctaccattatcaacaaggtaagggggtggtggtacaagactaccaacacaaaccatagcatcatccaaattag 10371724  T
Q  312 gaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttatgatgtacctccaacaa 387  Q
     | |||||||||||||||||||||||||| | ||||||||||||||||||||||||  ||| ||||||||||||||    
T  10371725 aatttccttcaacataactaacttgttcactcttcaaatcataccaaaacagcttccaatgttgtacctccaacaa 10371800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 194 - 360
Target Start/End: Original strand, 10352879 - 10353045
Alignment:
Q  194 aataaaaagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatct 293  Q
    ||||| ||||||||||||| ||||| ||||||| ||||||||| |||||||  |||||||||||| ||| |||||||||||||||||||||||| ||||     
T  10352879 aataagaagtaccttttctcgctctcgcttgtaggattctcctgcttcctacgattatcaacagggaagtaaggtggtacaagacttccaacacaaatca 10352978  T
Q  294 tagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaa 360  Q
    |||   |||| ||||   ||||| ||| ||||||||||||||||| | | | |||||||||||||||    
T  10352979 tagtgtcatccaaattaagaatttcttgaacataactaacttgtttactctccaaatcataccaaaa 10353045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 195 - 302
Target Start/End: Complemental strand, 7116040 - 7115933
Alignment:
Q  195 ataaaaagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatctt 294  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||| ||| || ||||      
T  7116040 ataagaagtaccttctcttgctcttgcttgtatgattctccttcttcctacaattatcaacagggaaggaaggtggtacaaggctttcaaaacaaatcaa 7115941  T
Q  295 agctccat 302  Q
    ||||||||    
T  7115940 agctccat 7115933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 311 - 417
Target Start/End: Original strand, 16268955 - 16269061
Alignment:
Q  311 ggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttatgatgtacctccaacaatacctcaattccttctaacagaa 410  Q
    |||||||||||||||||||||||| ||||| | ||||||||||||||||||| |||||||| ||| || |||||||| |||||||||||||| || ||||    
T  16268955 ggaattccttcaacataactaactcgttcactcttcaaatcataccaaaacaacttcttataatgcacgtccaacaaaacctcaattccttcaaagagaa 16269054  T
Q  411 ccttact 417  Q
    |||||||    
T  16269055 ccttact 16269061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 215 - 365
Target Start/End: Original strand, 10341140 - 10341293
Alignment:
Q  215 ctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaa 314  Q
    |||||||||| | |||||||||||||||||  ||| |||||||| ||| |||||||||| | |||||||||||  ||| ||||  |||| ||||| ||||    
T  10341140 ctcttgcttgaaggattctccttcttcctacgattgtcaacagggaagaaaggtggtactatacttccaacacacatcatagcatcatccaaatcaggaa 10341239  T
Q  315 ttccttcaac---ataactaacttgttcagtattcaaatcataccaaaacagct 365  Q
    ||||||||||   |||||||||||||||| | | ||||||||||||||||||||    
T  10341240 ttccttcaacataataactaacttgttcactctccaaatcataccaaaacagct 10341293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 9320390 - 9320487
Alignment:
Q  5 aaagacattttgccattaggatgaggcaagtacataaaatgacatgacgcaaagagaagaatgcgctgtcacattgcataaattgttgtcaattcata 102  Q
    |||| |||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||  ||| |||||| ||||| |||| ||||||||||||    
T  9320390 aaagtcatttttccattagggtgaggcaagtacataaaatgacatgatgcaaagagaagaatttgctatcacatagcatacattgctgtcaattcata 9320487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 101 - 286
Target Start/End: Complemental strand, 9295097 - 9294920
Alignment:
Q  101 tagcacagagtttaactgcataaaccatatgatgggtccattgaactggatattaactaatacatagcaaaaactcaataaactaggataatgaataaa- 199  Q
    ||||| ||||||||||  ||||||  |||||||||||||||| ||||  | ||||||| ||||| ||||||||        |||  |||||| ||||||     
T  9295097 tagcatagagtttaaccacataaattatatgatgggtccattaaactaaa-attaacttatacaaagcaaaaa--------actcagataatcaataaag 9295007  T
Q  200 aagtaccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaaca 286  Q
    ||||||||| ||||||||||||||  | ||||||||||||| ||||||||||||||||| |||||||||| ||| |||||| |||||    
T  9295006 aagtaccttctcttgctcttgcttaaacgattctccttcttactagaattatcaacagggaaggaaggtgctacgagactttcaaca 9294920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 9328002 - 9328086
Alignment:
Q  18 cattaggatgaggcaagtacataaaatgacatgacgcaaagagaagaatgcgctgtcacattgcataaattgttgtcaattcata 102  Q
    ||||||| |||||||||||||||||||||||||| |||||||||| |||   || |||||| ||||| |||| ||||||||||||    
T  9328002 cattagggtgaggcaagtacataaaatgacatgatgcaaagagaataattttctatcacatagcatacattgctgtcaattcata 9328086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 248 - 370
Target Start/End: Complemental strand, 8579823 - 8579701
Alignment:
Q  248 ttatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattca 347  Q
    ||||||| ||| ||||||||||||| |||  ||||||||  |||| ||| | ||| |||||  |||||||||| |||| || |||||| |||| | || |    
T  8579823 ttatcaataggcaaggaaggtggtagaagggttccaacataaatcatagtttcattgaaattaggaattccttgaacacaagtaacttcttcacttttga 8579724  T
Q  348 aatcataccaaaacagcttctta 370  Q
     ||||||||||||||||||||||    
T  8579723 gatcataccaaaacagcttctta 8579701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 104 - 177
Target Start/End: Original strand, 10371532 - 10371604
Alignment:
Q  104 cacagagtttaactgcataaaccatatgatgggtccattgaactggatattaactaatacatagcaaaaactca 177  Q
    ||||||||||||||||||| |  ||||||||| ||||||||||| |||||||||| ||||| | ||||||||||    
T  10371532 cacagagtttaactgcatatataatatgatggatccattgaact-gatattaacttatacacaacaaaaactca 10371604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 367
Target Start/End: Complemental strand, 7115900 - 7115844
Alignment:
Q  311 ggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttc 367  Q
    ||||||||||||||| |||||||||||||  | |||||||||||||||| |||||||    
T  7115900 ggaattccttcaacacaactaacttgttcgctcttcaaatcataccaaaccagcttc 7115844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 9364442 - 9364502
Alignment:
Q  238 cttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagct 298  Q
    ||||||| ||||||||||||| || ||||||||||||||||| ||||||| |||| |||||    
T  9364442 cttcctacaattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagct 9364502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 12019323 - 12019264
Alignment:
Q  107 agagtttaactgcataaaccatatgatgggtccattgaactggatattaactaatacata 166  Q
    ||||||||||| |||| | |||||||||||||||||||| ||||| |||||| |||||||    
T  12019323 agagtttaactacatatatcatatgatgggtccattgaattggatgttaacttatacata 12019264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 203 - 417
Target Start/End: Original strand, 37462244 - 37462461
Alignment:
Q  203 taccttttcttgctcttgcttgtatgattctccttcttcctagaattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagc---tc 299  Q
    |||||| ||||||||||||||||    | ||||||||||||| ||||||||||||| || | ||||| |||||||||| |||||| |||| ||||   ||    
T  37462244 taccttctcttgctcttgcttgtcctgtcctccttcttcctacaattatcaacagggaaaggaggtgatacaagactttcaacacaaatcatagcagctc 37462343  T
Q  300 catcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttatgatgtacctccaacaatacctcaattcc 399  Q
    |||  ||||  |||| |||||||| |||||||||||||||| | ||| |||||||||||||||||||  | |||| ||||| |||||| |||| ||| ||    
T  37462344 cattcaaattaggaactccttcaatataactaacttgttcactcttccaatcataccaaaacagctttctgtgatctaccttcaacaaaacctgaatgcc 37462443  T
Q  400 ttctaacagaaccttact 417  Q
    ||| |||| |||||||||    
T  37462444 ttccaacaaaaccttact 37462461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 246 - 363
Target Start/End: Complemental strand, 41967028 - 41966911
Alignment:
Q  246 aattatcaacaggaaaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtatt 345  Q
    ||||| ||||||| |||||||||||||||||||||||||||| || | | ||| |||| ||||  |||||||||||||||||| ||| ||||||| | ||    
T  41967028 aattaacaacagggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttcaacataagtaatttgttcactctt 41966929  T
Q  346 caaatcataccaaaacag 363  Q
    ||||||||||||||||||    
T  41966928 caaatcataccaaaacag 41966911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 29453610 - 29453502
Alignment:
Q  260 aaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaa 359  Q
    ||||||||||| |||||||||||||||| |||| |||||  ||||||||  ||||||||||||||| |||||||||||||| | || | |||||||||||    
T  29453610 aaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactcttgagatcataccaaa 29453511  T
Q  360 acagcttct 368  Q
    |||||||||    
T  29453510 acagcttct 29453502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 29423101 - 29423209
Alignment:
Q  260 aaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaa 359  Q
    |||||||||| ||||||||||||||||| |||| | |||  ||||||||  |||||||||| |||| |||||||||||||| | || | |||||||||||    
T  29423101 aaggaaggtgatacaagacttccaacacaaatcatggcttgatcgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaa 29423200  T
Q  360 acagcttct 368  Q
    |||||||||    
T  29423201 acagcttct 29423209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 29468086 - 29467978
Alignment:
Q  260 aaggaaggtggtacaagacttccaacactaatcttagctccatcgaaatcgggaattccttcaacataactaacttgttcagtattcaaatcataccaaa 359  Q
    |||||||||||||||||||||||||||| |||| ||||| |||  ||||  |||||||||||||||||| |||| |||||| | || | |||||||||||    
T  29468086 aaggaaggtggtacaagacttccaacacaaatcatagcttcattcaaattaggaattccttcaacataattaacatgttcactcttgagatcataccaaa 29467987  T
Q  360 acagcttct 368  Q
    ||| |||||    
T  29467986 acaacttct 29467978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 29453730 - 29453663
Alignment:
Q  109 agtttaactgcataaaccatatgatgggtccattgaactggatattaactaatacatagcaaaaactca 177  Q
    |||||||||||||| | |||||||||| || |||||||| || ||||||| ||||| ||||||||||||    
T  29453730 agtttaactgcatatatcatatgatggatctattgaact-gaaattaacttatacagagcaaaaactca 29453663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 208
Target Start/End: Complemental strand, 29468199 - 29468117
Alignment:
Q  126 catatgatgggtccattgaactg-gatattaactaatacatagcaaaaactcaataaactaggataatgaataaaaagtacctt 208  Q
    |||||||| |||||||| ||||| |||||||||| ||||||| ||||||||||| |||||  || ||| ||||| |||||||||    
T  29468199 catatgataggtccatt-aactgtgatattaacttatacataacaaaaactcaaaaaactcagacaatcaataagaagtacctt 29468117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 368
Target Start/End: Complemental strand, 29443576 - 29443519
Alignment:
Q  311 ggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttct 368  Q
    |||||||||||||||||||||||   |||| | || | ||||||||||||||||||||    
T  29443576 ggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttct 29443519  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 177
Target Start/End: Complemental strand, 29443748 - 29443680
Alignment:
Q  108 gagtttaactgcataaaccatatgatgggtccattgaactggatattaactaatacatagcaaaaactca 177  Q
    ||||||||||  ||| | |||||||||||||||||||| | |||||||||| ||||| || |||||||||    
T  29443748 gagtttaactagatatatcatatgatgggtccattgaa-ttgatattaacttatacaaagaaaaaactca 29443680  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 367
Target Start/End: Original strand, 45230295 - 45230351
Alignment:
Q  311 ggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttc 367  Q
    |||||||||| ||||| | ||||||||||| | || |||||||||||||||||||||    
T  45230295 ggaattccttgaacatgagtaacttgttcactcttgaaatcataccaaaacagcttc 45230351  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 378
Target Start/End: Original strand, 45243557 - 45243624
Alignment:
Q  311 ggaattccttcaacataactaacttgttcagtattcaaatcataccaaaacagcttcttatgatgtac 378  Q
    |||||||||| ||||||| ||| ||||||| | || | ||||||||||||||||||| || |||||||    
T  45243557 ggaattccttgaacataagtaagttgttcactgttgagatcataccaaaacagcttcctaggatgtac 45243624  T

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