View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1435_low_28 (Length: 426)

Name: NF1435_low_28
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1435_low_28
NF1435_low_28
[»] chr3 (15 HSPs)
chr3 (47-326)||(8431406-8431686)
chr3 (47-190)||(43073034-43073178)
chr3 (47-193)||(31525360-31525507)
chr3 (47-184)||(28934724-28934861)
chr3 (53-190)||(10454279-10454422)
chr3 (63-199)||(44656229-44656369)
chr3 (71-190)||(47820897-47821022)
chr3 (53-190)||(9358743-9358883)
chr3 (47-184)||(52076066-52076209)
chr3 (67-190)||(53349401-53349527)
chr3 (47-184)||(20701152-20701292)
chr3 (60-184)||(28956952-28957079)
chr3 (53-184)||(42881885-42882019)
chr3 (71-190)||(46750212-46750333)
chr3 (131-190)||(55166895-55166955)
[»] chr1 (14 HSPs)
chr1 (63-268)||(31833817-31834019)
chr1 (48-193)||(12172951-12173097)
chr1 (47-278)||(19472716-19472944)
chr1 (72-190)||(46757306-46757425)
chr1 (53-190)||(26990601-26990739)
chr1 (47-184)||(8462958-8463097)
chr1 (71-190)||(42442019-42442142)
chr1 (53-190)||(47028931-47029072)
chr1 (47-190)||(38548673-38548821)
chr1 (65-184)||(41955891-41956016)
chr1 (100-190)||(43268645-43268739)
chr1 (53-190)||(26384960-26385100)
chr1 (47-184)||(28447722-28447863)
chr1 (48-189)||(43460698-43460848)
[»] chr7 (14 HSPs)
chr7 (53-190)||(46691839-46691981)
chr7 (47-184)||(30655586-30655727)
chr7 (47-184)||(22197675-22197816)
chr7 (47-184)||(22240005-22240146)
chr7 (64-184)||(36615808-36615927)
chr7 (48-193)||(31424761-31424912)
chr7 (47-184)||(1039051-1039191)
chr7 (71-184)||(49035865-49035983)
chr7 (65-187)||(41702867-41702992)
chr7 (75-184)||(33320710-33320817)
chr7 (224-278)||(30655761-30655815)
chr7 (53-193)||(32678937-32679083)
chr7 (47-124)||(42598053-42598130)
chr7 (53-190)||(43397640-43397781)
[»] chr2 (6 HSPs)
chr2 (60-196)||(38908663-38908800)
chr2 (63-190)||(41419617-41419748)
chr2 (53-190)||(14732334-14732473)
chr2 (72-190)||(41378216-41378332)
chr2 (47-184)||(22649053-22649193)
chr2 (71-124)||(43356750-43356803)
[»] chr8 (13 HSPs)
chr8 (47-190)||(40930818-40930961)
chr8 (47-183)||(13959207-13959347)
chr8 (51-190)||(24200614-24200753)
chr8 (53-190)||(25829259-25829399)
chr8 (46-190)||(5200469-5200615)
chr8 (54-190)||(22839250-22839391)
chr8 (47-190)||(38086402-38086551)
chr8 (117-184)||(10124866-10124935)
chr8 (47-190)||(30836116-30836272)
chr8 (47-96)||(7845135-7845184)
chr8 (48-124)||(44362918-44362994)
chr8 (47-111)||(584123-584187)
chr8 (131-190)||(7845080-7845138)
[»] chr4 (9 HSPs)
chr4 (63-184)||(16572074-16572198)
chr4 (48-182)||(47571560-47571694)
chr4 (47-190)||(32183275-32183425)
chr4 (53-149)||(15186975-15187072)
chr4 (53-187)||(55133102-55133233)
chr4 (53-190)||(25641263-25641407)
chr4 (53-191)||(16662301-16662441)
chr4 (53-189)||(42390766-42390906)
chr4 (47-97)||(45511390-45511440)
[»] chr5 (10 HSPs)
chr5 (71-190)||(23172985-23173107)
chr5 (65-190)||(22887211-22887337)
chr5 (47-190)||(9931785-9931935)
chr5 (65-199)||(25539810-25539947)
chr5 (47-184)||(10431063-10431204)
chr5 (64-184)||(819134-819254)
chr5 (48-190)||(3677779-3677924)
chr5 (47-175)||(42241577-42241708)
chr5 (132-184)||(2292168-2292222)
chr5 (47-105)||(9597742-9597800)
[»] chr6 (8 HSPs)
chr6 (47-184)||(33112703-33112844)
chr6 (53-190)||(10246910-10247049)
chr6 (46-278)||(11546685-11546912)
chr6 (56-191)||(6575720-6575860)
chr6 (48-190)||(15859093-15859244)
chr6 (47-278)||(34761080-34761306)
chr6 (131-190)||(33984753-33984814)
chr6 (62-105)||(12754422-12754465)
[»] scaffold0209 (1 HSPs)
scaffold0209 (47-111)||(12883-12947)
[»] scaffold0343 (1 HSPs)
scaffold0343 (49-105)||(7956-8012)


Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 47 - 326
Target Start/End: Original strand, 8431406 - 8431686
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggtt 146  Q
    ||||| ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8431406 tttttttttttgaaacggcaaaatattattgatcaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggtt 8431505  T
Q  147 gccacaaaacaccggctcgaacaaaaaccccttaaaaaccaccctaacactaaggcactaactaccggac-acaaaaataatgacgcagacatatacaaa 245  Q
    || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | | ||||| |||||||||||||||||||||    
T  8431506 gcaacaaaacaccggctcgaacaaaaaccccttaaaaaccaccccaacactaaggcactaactaccggtcaaaaaaaaaaatgacgcagacatatacaaa 8431605  T
Q  246 tgacaatccgcaagcatacccctgcatcaacactcataacagccaaaactgcagcaccacaccaaaaagacagcagcaacc 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8431606 tgacaatccgcaagcatacccctgcatcaacactcataacagccaaaactacagcaccacaccaaaaagacagcagcaacc 8431686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 47 - 190
Target Start/End: Original strand, 43073034 - 43073178
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaata-aacacaaggggaaatcggt 145  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||||||||||||||| ||||| || ||||||||| | || ||||||||||||||||    
T  43073034 tttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtggaaaaaaaagaatacaaggggaaatcggt 43073133  T
Q  146 tgccacaaaacaccggctcgaacaaaaaccccttaaaaaccaccc 190  Q
    ||||  |||||||||||||||||||||||||||||||||||||||    
T  43073134 tgccttaaaacaccggctcgaacaaaaaccccttaaaaaccaccc 43073178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 47 - 193
Target Start/End: Complemental strand, 31525507 - 31525360
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggtt 146  Q
    ||||| |||||||| |||||||| |||||||||||| ||||| |||||||| ||||||| ||||| || ||||||||| | | |||||||||||||||||    
T  31525507 tttttttttttgaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaataagcttgggtggaaaaaaaacaaacaaggggaaatcggtt 31525408  T
Q  147 gccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccctaa 193  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||    
T  31525407 gccacacaaacaacggctcgaacaaaaaccccttaaaaaccaccctaa 31525360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 47 - 184
Target Start/End: Original strand, 28934724 - 28934861
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga-aaaaataaacacaaggggaaatcggt 145  Q
    ||||| ||||||||   |||||| |||||||||||| |||||||||||||| ||||||| |||||||| |||| |||||  || ||||||||||||||||    
T  28934724 tttttttttttgaattagcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggagaaaaaacaaaacaaggggaaatcggt 28934823  T
Q  146 tgccacaaaacaccggctcgaacaaaaaccccttaaaaa 184  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  28934824 tgccac-aaacaccggctcgaacaaaaaccccttaaaaa 28934861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 53 - 190
Target Start/End: Complemental strand, 10454422 - 10454279
Alignment:
Q  53 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg-----aaaaaataaacacaaggggaaatcggttg 147  Q
    ||||||||| ||||||| |||||||||||| |||||||||||||  ||||||| |||||||| |||     |||||||| | ||||||||||||||||||    
T  10454422 tttttgaaatggcaaaatattattaaccaacaagcccgtgcaaggagcactaataagctcgggtgggaaaaaaaaaatacatacaaggggaaatcggttg 10454323  T
Q  148 ccacaa-aacaccggctcgaacaaaaaccccttaaaaaccaccc 190  Q
    |||||| ||  ||||||| |||||||||||||||||||||||||    
T  10454322 ccacaagaaagccggctcaaacaaaaaccccttaaaaaccaccc 10454279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 63 - 199
Target Start/End: Original strand, 44656229 - 44656369
Alignment:
Q  63 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga-aaaaataaac---acaaggggaaatcggttgccacaaaacac 158  Q
    ||||||| |||||||||||| ||||||||||||||||||| || |||||||| |||| ||||| ||||   ||||||| ||||||||||||| | |||||    
T  44656229 ggcaaaatattattaaccaacaagcccgtgcaagatgcacaaataagctcgggtggagaaaaaaaaaccatacaagggaaaatcggttgccatataacac 44656328  T
Q  159 cggctcgaacaaaaaccccttaaaaaccaccctaacactaa 199  Q
     | |||||||||||| ||||||||||||||||||| |||||    
T  44656329 agactcgaacaaaaatcccttaaaaaccaccctaaaactaa 44656369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 71 - 190
Target Start/End: Complemental strand, 47821022 - 47820897
Alignment:
Q  71 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg----aaaaaataaacacaaggggaaatcggttgccaca-aaacaccggctcg 165  Q
    |||||||||||| |||||||||||||| ||||||| |||||||| |||    |||||||| | | |||||||||||||||||| || |||||||||||||    
T  47821022 attattaaccaacaagcccgtgcaagacgcactaataagctcgggtggaggaaaaaaatacaaagaaggggaaatcggttgccgcacaaacaccggctcg 47820923  T
Q  166 aacaaaaacccc-ttaaaaaccaccc 190  Q
    |||||||||||| |||||||||||||    
T  47820922 aacaaaaacccctttaaaaaccaccc 47820897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 53 - 190
Target Start/End: Original strand, 9358743 - 9358883
Alignment:
Q  53 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa-acacaaggggaaatcggttgccac 151  Q
    |||||||| |||||||| ||||||| |||| |||||||||| ||| | ||||| ||||| || |||| |||| || | | |||||||||||||||||| |    
T  9358743 tttttgaatcggcaaaatattattacccaacaagcccgtgcgagaagtactaataagcttgggtggagaaaaaaacatagaaggggaaatcggttgccgc 9358842  T
Q  152 a-aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 190  Q
    | ||||||||||||||||||||||||| |||||||||||||    
T  9358843 acaaacaccggctcgaacaaaaacccctttaaaaaccaccc 9358883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 47 - 184
Target Start/End: Complemental strand, 52076209 - 52076066
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga------aaaaataaacacaaggggaaa 140  Q
    ||||| |||||||| |||||||| |||| ||||||| |||||||||| ||| ||||||| |||||||| ||||      ||||||| | |||||||| ||    
T  52076209 tttttttttttgaatcggcaaaatattactaaccaacaagcccgtgcgagaagcactaataagctcgggtggagaaaaaaaaaatacaaacaaggggtaa 52076110  T
Q  141 tcggttgccacaaaacaccggctcgaacaaaaaccccttaaaaa 184  Q
    |||||||||| ||||||   ||||||||||||||||||||||||    
T  52076109 tcggttgccataaaacaaacgctcgaacaaaaaccccttaaaaa 52076066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 67 - 190
Target Start/End: Complemental strand, 53349527 - 53349401
Alignment:
Q  67 aaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca--caaggggaaatcggttgccaca-aaacaccggct 163  Q
    |||||||||||||||| |||| | ||||||| ||||||| || || || ||| |||| ||||||  |||||| |||||||||||| || |||||||||||    
T  53349527 aaaaattattaaccaacaagctcatgcaagaagcactaataaacttgggtgggaaaattaaacatacaagggaaaatcggttgccgcacaaacaccggct 53349428  T
Q  164 cgaacaaaaaccccttaaaaaccaccc 190  Q
    | |||||||||||||||||||||||||    
T  53349427 caaacaaaaaccccttaaaaaccaccc 53349401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 47 - 184
Target Start/End: Complemental strand, 20701292 - 20701152
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga---aaaaataaacacaaggggaaatcg 143  Q
    ||||| ||||| || | |||||| ||||||||||||  ||||||| ||||| ||||||| |||||||| || |   ||||||| | ||||||||||||||    
T  20701292 tttttttttttaaatcagcaaaatattattaaccaacgagcccgtacaagaagcactaataagctcgggtgaagaaaaaaatacaaacaaggggaaatcg 20701193  T
Q  144 gttgccacaaaacaccggctcgaacaaaaaccccttaaaaa 184  Q
     |||||||| |||  ||||||||||||||||||||||||||    
T  20701192 attgccacacaactacggctcgaacaaaaaccccttaaaaa 20701152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 60 - 184
Target Start/End: Complemental strand, 28957079 - 28956952
Alignment:
Q  60 aacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacaca--aggggaaatcggttgccaca-aaac 156  Q
    |||| ||||| |||||||||||| ||| ||||||||||  |||| | |||||||| ||  ||||| ||||| |  |||||||||||||||||||| ||||    
T  28957079 aacgacaaaatattattaaccaacaagtccgtgcaagaaacactgataagctcgggtgagaaaaaaaaacaaagaaggggaaatcggttgccacacaaac 28956980  T
Q  157 accggctcgaacaaaaaccccttaaaaa 184  Q
    ||||||||||||||||||||||| ||||    
T  28956979 accggctcgaacaaaaacccctttaaaa 28956952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 53 - 184
Target Start/End: Complemental strand, 42882019 - 42881885
Alignment:
Q  53 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca----caaggggaaatcggttgc 148  Q
    ||||| || |||||||| ||||||| |||| |||| ||| ||||||||||||| ||||||||  |||||||| | |||    ||||||||||||| ||||    
T  42882019 tttttaaatcggcaaaatattatta-ccaacaagctcgtacaagatgcactaaaaagctcgggaggaaaaaaaacacaaatacaaggggaaatcgattgc 42881921  T
Q  149 cacaaaacaccggctcgaacaaaaaccccttaaaaa 184  Q
    ||||| |||||||||| ||||||||| |||||||||    
T  42881920 cacaatacaccggctcaaacaaaaacgccttaaaaa 42881885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 190
Target Start/End: Complemental strand, 46750333 - 46750212
Alignment:
Q  71 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatg---gaaaaaataaacacaaggggaaatcggttgccacaaaacaccggctcgaa 167  Q
    |||||||||||| ||  | || ||||||||||||| |||||||| ||   ||||||  ||| |||| || |||||||||||| ||||||||||| |||||    
T  46750333 attattaaccaacaaatctgtacaagatgcactaataagctcgggtgaaagaaaaagaaaatacaaaggaaaatcggttgccgcaaaacaccggttcgaa 46750234  T
Q  168 caaaaaccccttaaaaaccaccc 190  Q
    |||||| ||||||||||||||||    
T  46750233 caaaaa-cccttaaaaaccaccc 46750212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 55166895 - 55166955
Alignment:
Q  131 caaggggaaatcggttgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 190  Q
    ||||||||||||||||||| || ||||   |||||||||||||||||||||||||||||||    
T  55166895 caaggggaaatcggttgccgcacaaactttggctcgaacaaaaaccccttaaaaaccaccc 55166955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 63 - 268
Target Start/End: Complemental strand, 31834019 - 31833817
Alignment:
Q  63 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccacaaaacaccggc 162  Q
    ||||||| |||||||||||| ||  ||||||||||||||||||||||||||| || ||||||   | ||||||| ||||||||||||||| |||||||||    
T  31834019 ggcaaaatattattaaccaacaaatccgtgcaagatgcactaacaagctcgggtgaaaaaaa---atacaagggaaaatcggttgccacataacaccggc 31833923  T
Q  163 tcgaacaaaaaccccttaaaaaccaccctaacactaaggcactaactaccggacacaaaaataatgacgcagacatatacaaatgacaatccgcaagcat 262  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||| | ||||||| |||||||||||||||||||||||| ||||||||||||||    
T  31833922 tcgaacaaaaaccccttaaaaaccaccccaacactaaggcacaaactaccagtcacaaaagtaatgacgcagacatatacaaatggcaatccgcaagcat 31833823  T
Q  263 acccct 268  Q
    ||||||    
T  31833822 acccct 31833817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 48 - 193
Target Start/End: Complemental strand, 12173097 - 12172951
Alignment:
Q  48 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttg 147  Q
    |||| |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| ||||| || ||||||||| | | ||||||||||||||||||    
T  12173097 ttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagcttgggtggaaaaaaaacaaacaaggggaaatcggttg 12172998  T
Q  148 ccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccctaa 193  Q
    ||||| ||||| | |||||||||||||||||||||||||||||||||    
T  12172997 ccacacaaacatcagctcgaacaaaaaccccttaaaaaccaccctaa 12172951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 47 - 278
Target Start/End: Complemental strand, 19472944 - 19472716
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg--gaaaaaataaacacaaggggaaatcgg 144  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| |||||||| ||  ||||||||| | | ||||||||||| |    
T  19472944 tttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggagaaaaaatacaaagaaggggaaatcag 19472845  T
Q  145 ttgccaca-aaacaccggctcgaacaaaaa-ccccttaaaaaccaccctaacactaaggcactaactaccggacacaaaaataatgacgcagacatatac 242  Q
    |||||| | |||| |||||||||||||||| ||| |||||||||||||  | ||||||| ||  ||       ||||| | ||||||||||| |||||||    
T  19472844 ttgccatacaaactccggctcgaacaaaaatccctttaaaaaccacccataaactaaggaacacac-------cacaagagtaatgacgcaggcatatac 19472752  T
Q  243 aaatgacaatccgcaagcatacccctgcatcaacac 278  Q
    || |||||  || |||||||||||||||||||||||    
T  19472751 aagtgacagaccacaagcatacccctgcatcaacac 19472716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 72 - 190
Target Start/End: Complemental strand, 46757425 - 46757306
Alignment:
Q  72 ttattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccacaa-aacaccggctcgaacaa 170  Q
    ||||||||||| |||||||||||||||||||||| |||||| | |||||||||  || | |||||||||||| ||||||||| |||||| ||||||||||    
T  46757425 ttattaaccaacaagcccgtgcaagatgcactaataagctcaggtggaaaaaaacaatataaggggaaatcgattgccacaataacaccagctcgaacaa 46757326  T
Q  171 aaaccccttaaaaaccaccc 190  Q
    |||||| |||||||||||||    
T  46757325 aaaccctttaaaaaccaccc 46757306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 53 - 190
Target Start/End: Complemental strand, 26990739 - 26990601
Alignment:
Q  53 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccaca 152  Q
    |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| ||||| || ||||||||| | | ||||||| |||||| ||||| ||    
T  26990739 tttttgaatcggcaaaatattattaaccaataagcccgtgcaagaagcactaataagcttgggtggaaaaaaaacatacaagggaaaatcgattgccgca 26990640  T
Q  153 -aaacaccggctcgaacaaaaaccccttaaaaaccaccc 190  Q
     || ||||||||| |||||||| ||||||||||||||||    
T  26990639 caagcaccggctcaaacaaaaatcccttaaaaaccaccc 26990601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 47 - 184
Target Start/End: Original strand, 8462958 - 8463097
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg--gaaaaaataaacacaaggggaaatcgg 144  Q
    ||||| ||||||||| || |||| |||||||||||| |||| ||||||||| |||||||  ||||||| ||  ||||||||| | ||||||| |||||||    
T  8462958 tttttttttttgaaatgg-aaaatattattaaccaacaagctcgtgcaagaagcactaattagctcgggtggagaaaaaatacatacaagggaaaatcgg 8463056  T
Q  145 ttgccac-aaaacaccggctcgaacaaaaaccccttaaaaa 184  Q
    ||||||| |||||  ||||||||||||||||||||||||||    
T  8463057 ttgccacaaaaacgtcggctcgaacaaaaaccccttaaaaa 8463097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 71 - 190
Target Start/End: Original strand, 42442019 - 42442142
Alignment:
Q  71 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa---acacaaggggaaatcggttgccac-aaaacaccggctcga 166  Q
    |||||||||||| ||| |||||||||| ||||||| |||||||| || |||||| ||   | |||| ||||||||||||||||  ||||||||| |||||    
T  42442019 attattaaccaacaagtccgtgcaagaagcactaataagctcgggtgaaaaaaaaaatacaaacaacgggaaatcggttgccattaaaacaccgactcga 42442118  T
Q  167 acaaaaaccccttaaaaaccaccc 190  Q
    ||||||||||||||||||||||||    
T  42442119 acaaaaaccccttaaaaaccaccc 42442142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 53 - 190
Target Start/End: Complemental strand, 47029072 - 47028931
Alignment:
Q  53 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa-----taaacacaaggggaaatcggttg 147  Q
    ||||||||||||| ||| ||||  |||||| |||  ||||||||| ||| ||| |||||||| |||||||||     |||| ||||||||||||||||||    
T  47029072 tttttgaaacggccaaatatta--aaccaacaagttcgtgcaagacgcattaataagctcgggtggaaaaaaaaacataaatacaaggggaaatcggttg 47028975  T
Q  148 ccacaaaa-caccggctcgaacaaaaaccccttaaaaaccaccc 190  Q
    || ||||| |||||||||||||||||||||||||||||| ||||    
T  47028974 ccgcaaaaacaccggctcgaacaaaaaccccttaaaaactaccc 47028931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 47 - 190
Target Start/End: Complemental strand, 38548821 - 38548673
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg--aaaaaataaaca--caaggggaaatc 142  Q
    ||||| |||||||| |||||||| |||||||||||| || ||||||||||| ||||||| |||||||| |||  |||||| |||||  ||||||||||||    
T  38548821 tttttttttttgaatcggcaaaatattattaaccaacaaacccgtgcaagacgcactaataagctcgggtgggaaaaaaaaaaacaagcaaggggaaatc 38548722  T
Q  143 ggttgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 190  Q
    |||||||| | |||    ||||||||||||  |||||||||||||||||    
T  38548721 ggttgccatacaaaatttggctcgaacaaaccccccttaaaaaccaccc 38548673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 184
Target Start/End: Original strand, 41955891 - 41956016
Alignment:
Q  65 caaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa-----acacaaggggaaatcggttgccacaa-aacac 158  Q
    ||||| |||||||||||| ||   |||||||||| |||||| ||||| ||||||| |||| ||     | ||||||||||||||||||||| || |||||    
T  41955891 caaaatattattaaccaacaaattcgtgcaagatacactaataagcttggatggagaaaaaaactaaaatacaaggggaaatcggttgccataataacac 41955990  T
Q  159 cggctcgaacaaaaaccccttaaaaa 184  Q
    ||||||||||||||| ||||||||||    
T  41955991 cggctcgaacaaaaatcccttaaaaa 41956016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 100 - 190
Target Start/End: Original strand, 43268645 - 43268739
Alignment:
Q  100 cactaacaagctcggatggaaaaaataaacaca--aggggaaatcggttgccaca-aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 190  Q
    |||||| |||||||| |||| |||| ||||| |  ||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||    
T  43268645 cactaataagctcgggtggagaaaaaaaacaaagaaggggaaatcggttgccgcacaaacaccggctcgaacaaaaacccctttaaaaaccaccc 43268739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 53 - 190
Target Start/End: Complemental strand, 26385100 - 26384960
Alignment:
Q  53 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa---acacaaggggaaatcggttgcc 149  Q
    |||||||||| | |||| |||||||||| | |||||||| ||||| || |||| ||||| || ||||||||| ||   | |||| ||||||||||||| |    
T  26385100 tttttgaaacagtaaaatattattaaccgacaagcccgt-caagaagcgctaataagcttgggtggaaaaaaaaatacaaacaaagggaaatcggttgtc 26385002  T
Q  150 aca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 190  Q
    | | ||||||| |||| ||||||| |||||||||||||||||    
T  26385001 atacaaacaccagctcaaacaaaacccccttaaaaaccaccc 26384960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 184
Target Start/End: Complemental strand, 28447863 - 28447722
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa---acacaaggggaaatcg 143  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| ||  |||  || |||||| ||   | ||||||| ||||||    
T  28447863 tttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaataaattcgagtgaaaaaaaaaagacaaacaagggaaaatcg 28447764  T
Q  144 gttgccaca-aaacaccggctcgaacaaaaaccccttaaaaa 184  Q
    ||||| | | ||||| | || |||||||||||| ||||||||    
T  28447763 gttgcaatataaacatcagcacgaacaaaaacctcttaaaaa 28447722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 189
Target Start/End: Complemental strand, 43460848 - 43460698
Alignment:
Q  48 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg----gaaaaaataaac--acaaggggaaat 141  Q
    |||| |||||||| || ||||| |||||||||||| ||| | |||| ||| ||||||| |||||  | ||    ||||||| ||||  | ||||||||||    
T  43460848 ttttttttttgaatcgacaaaatattattaaccaacaagtctgtgcgagaagcactaataagctaaggtgaaaagaaaaaaaaaactaagaaggggaaat 43460749  T
Q  142 cggttgcca--caaaacaccggctcgaacaaaaacccctt-aaaaaccacc 189  Q
    ||||||| |  |||||||| | |||||||||||||||||| ||||||||||    
T  43460748 cggttgcgatacaaaacactgactcgaacaaaaaccccttcaaaaaccacc 43460698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 53 - 190
Target Start/End: Original strand, 46691839 - 46691981
Alignment:
Q  53 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg----aaaaaataaacacaaggggaaatcggttgc 148  Q
    |||||||| |||||||| |||||||||||| |||||||||||||| |||||||||||||||| |||    |||||||| | |||||||||||||||||||    
T  46691839 tttttgaatcggcaaaatattattaaccaacaagcccgtgcaagaagcactaacaagctcgggtggagaaaaaaaatacatacaaggggaaatcggttgc 46691938  T
Q  149 caca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 190  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  46691939 cacataaacaccggctcgaacaaaaaccccttaaaaaccaccc 46691981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 47 - 184
Target Start/End: Original strand, 30655586 - 30655727
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg--aaaaaataaacacaaggggaaatcgg 144  Q
    ||||| ||||||||||||||||| |||||||||||| |||||||||||||| ||||||| |||||||| |||  |||||||| | |||||||||||||||    
T  30655586 tttttttttttgaaacggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagctcgggtggaaaaaaaatacaaacaaggggaaatcgg 30655685  T
Q  145 ttgc--cacaaaacaccggctcgaacaaaaaccccttaaaaa 184  Q
    ||||  ||||||| | || |||||||||||||| ||||||||    
T  30655686 ttgccacacaaaatatcgactcgaacaaaaacctcttaaaaa 30655727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 47 - 184
Target Start/End: Complemental strand, 22197816 - 22197675
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca-----caaggggaaat 141  Q
    ||||| |||||||||| | |||| |||||||||||| ||| ||||||||| |||||||| |||||||| ||||||||| |||||     |||||||||||    
T  22197816 tttttttttttgaaactgtaaaatattattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtggaaaaaa-aaacaaattacaaggggaaat 22197718  T
Q  142 cggttgccacaaaacaccggctcgaacaaaaaccccttaaaaa 184  Q
    || || ||||||||||||| |||||||||||||||||||||||    
T  22197717 cgattaccacaaaacaccgtctcgaacaaaaaccccttaaaaa 22197675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 47 - 184
Target Start/End: Original strand, 22240005 - 22240146
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca-----caaggggaaat 141  Q
    ||||| |||||||||| | |||| |||||||||||| ||| ||||||||| |||||||| |||||||| ||||||||| |||||     |||||||||||    
T  22240005 tttttttttttgaaactgtaaaatattattaaccaacaagtccgtgcaaggtgcactaaaaagctcgggtggaaaaaa-aaacaaattacaaggggaaat 22240103  T
Q  142 cggttgccacaaaacaccggctcgaacaaaaaccccttaaaaa 184  Q
    || || ||||||||||||| |||||||||||||||||||||||    
T  22240104 cgattaccacaaaacaccgtctcgaacaaaaaccccttaaaaa 22240146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 64 - 184
Target Start/End: Original strand, 36615808 - 36615927
Alignment:
Q  64 gcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccacaaaacaccggct 163  Q
    |||||| ||||||| |||| |||||||||||||| ||||||| |||||||| |||||||||  || |||||||||||||||||||||| |||| || |||    
T  36615808 gcaaaatattattacccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaacaaaacaaggggaaatcggttgccac-aaactccagct 36615906  T
Q  164 cgaacaaaaaccccttaaaaa 184  Q
    ||||||||||||| |||||||    
T  36615907 cgaacaaaaaccctttaaaaa 36615927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 48 - 193
Target Start/End: Original strand, 31424761 - 31424912
Alignment:
Q  48 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaac--acaaggggaaatcggt 145  Q
    |||| |||||||| |||||||| |||||||||||| || |||||||||||  |||||| ||||| || |||| |||| ||||  | ||||||||||||||    
T  31424761 ttttttttttgaagcggcaaaatattattaaccaacaaacccgtgcaagaaacactaataagcttgggtggagaaaaaaaacaaagaaggggaaatcggt 31424860  T
Q  146 tgcca--caaaacaccggctcgaacaaaaacccctt--aaaaaccaccctaa 193  Q
    |||||  | |||||||||||||| ||||||||||||  ||||||||||||||    
T  31424861 tgccattcgaaacaccggctcgatcaaaaacccctttaaaaaaccaccctaa 31424912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 47 - 184
Target Start/End: Original strand, 1039051 - 1039191
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaac--acaaggggaaatcgg 144  Q
    ||||| ||||| ||||||||||| |||||||||| | |||||||||||||| ||||||| |||||||| |||| |||| ||||  ||||||| |||||||    
T  1039051 tttttttttttcaaacggcaaaatattattaaccgacaagcccgtgcaagaagcactaataagctcgggtggataaaaaaaacaaacaagggaaaatcgg 1039150  T
Q  145 ttgccaca-aaacaccggctcgaacaaaaaccccttaaaaa 184  Q
    |||| | | ||||   |||||||||||||||||||||||||    
T  1039151 ttgcaatacaaactttggctcgaacaaaaaccccttaaaaa 1039191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 71 - 184
Target Start/End: Original strand, 49035865 - 49035983
Alignment:
Q  71 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa----acacaaggggaaatcggttgccaca-aaacaccggctcg 165  Q
    |||||||||||| ||| |||| ||||| ||||||| |||||||| |||| |||| ||    | ||||||||||||||||||||||| ||||||||| |||    
T  49035865 attattaaccaacaagtccgtacaagaagcactaataagctcgggtggagaaaaaaattacaaacaaggggaaatcggttgccacataaacaccggttcg 49035964  T
Q  166 aacaaaaaccccttaaaaa 184  Q
    |||||||||||||||||||    
T  49035965 aacaaaaaccccttaaaaa 49035983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 65 - 187
Target Start/End: Complemental strand, 41702992 - 41702867
Alignment:
Q  65 caaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca--caaggggaaatcggttgccaca-aaacaccgg 161  Q
    ||||| ||||| ||||||  ||||||||||||  ||||||| ||| | || |||| |||| |||||  ||||||||| ||||||||| || |||||||||    
T  41702992 caaaatattatcaaccaactagcccgtgcaaggagcactaataagtttgggtggagaaaaaaaacatacaaggggaagtcggttgccgcacaaacaccgg 41702893  T
Q  162 ctcgaacaaaaaccccttaaaaacca 187  Q
    ||||||||||||||||||||||||||    
T  41702892 ctcgaacaaaaaccccttaaaaacca 41702867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 75 - 184
Target Start/End: Complemental strand, 33320817 - 33320710
Alignment:
Q  75 ttaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccaca-aaacaccggctcgaacaaaaa 173  Q
    |||||||| |||||||||||||| ||||||| |||||||| ||| |||   ||| |||||||||||| |||||||  | ||||||||||||||||||||     
T  33320817 ttaaccaacaagcccgtgcaagaagcactaataagctcgggtgggaaa---aaaaacaaggggaaattggttgccttacaaacaccggctcgaacaaaac 33320721  T
Q  174 ccccttaaaaa 184  Q
    |||||||||||    
T  33320720 ccccttaaaaa 33320710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 30655761 - 30655815
Alignment:
Q  224 taatgacgcagacatatacaaatgacaatccgcaagcatacccctgcatcaacac 278  Q
    ||||||||| | ||||||||||||||||||| ||||||||||||||| |||||||    
T  30655761 taatgacgccggcatatacaaatgacaatccacaagcatacccctgcgtcaacac 30655815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 193
Target Start/End: Complemental strand, 32679083 - 32678937
Alignment:
Q  53 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg-----gaaaaaataaacacaaggggaaatcggttg 147  Q
    ||||| ||||||| |||  ||||||||||| |||||||||||||| ||||||| |||||||  ||      |||||| ||| ||||||  |||||| |||    
T  32679083 ttttttaaacggctaaattttattaaccaacaagcccgtgcaagacgcactaataagctcgagtgaaaaaaaaaaaaaaaatacaaggaaaaatcgattg 32678984  T
Q  148 ccac-aaaacaccggctcgaacaaaaaccccttaaaaaccaccctaa 193  Q
    || | |||| || |||| |||||||||||||||||||||||| ||||    
T  32678983 ccgctaaaatactggctggaacaaaaaccccttaaaaaccactctaa 32678937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 42598130 - 42598053
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 124  Q
    ||||| ||||| ||||||||||| |||||||||||| || ||||||||||| ||||||| ||||| || |||| ||||    
T  42598130 tttttttttttaaaacggcaaaatattattaaccaacaaacccgtgcaagaagcactaataagcttgggtggagaaaa 42598053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 190
Target Start/End: Complemental strand, 43397781 - 43397640
Alignment:
Q  53 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaaca------caaggggaaatcggtt 146  Q
    |||||||| ||||||| | ||||||||||| || ||||||||||| ||||||| ||||| || || |||||| ||| |      ||| || ||||| |||    
T  43397781 tttttgaatcggcaaata-ttattaaccaataaacccgtgcaagaagcactaa-aagcttgggtgaaaaaaaaaaaaaaacatacaaaggaaaatctgtt 43397684  T
Q  147 gccacaaaacaccggctcgaacaaaaaccccttaaaaaccaccc 190  Q
    ||||||||||| | |||||||||||||||| | |||||||||||    
T  43397683 gccacaaaacaactgctcgaacaaaaacccttaaaaaaccaccc 43397640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 6e-41; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 60 - 196
Target Start/End: Complemental strand, 38908800 - 38908663
Alignment:
Q  60 aacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa-taaacacaaggggaaatcggttgccacaaaacac 158  Q
    |||||||||| |||||||||||| ||| |||||||||||||||||| |||||||| || |||||| |||| ||||||| |||||||| ||||||||||||    
T  38908800 aacggcaaaatattattaaccaataaggccgtgcaagatgcactaataagctcgggtgaaaaaaaataaatacaagggaaaatcggtagccacaaaacac 38908701  T
Q  159 cggctcgaacaaaaaccccttaaaaaccaccctaacac 196  Q
    ||| |||||||||||||||||||||||||||| |||||    
T  38908700 cggttcgaacaaaaaccccttaaaaaccaccccaacac 38908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 63 - 190
Target Start/End: Complemental strand, 41419748 - 41419617
Alignment:
Q  63 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg---aaaaaataaacacaaggggaaatcggttgccacaa-aacac 158  Q
    ||||||| |||||||||||| |||||||||||||||||||||| |||||||| |||   |||||| ||| ||||||||||||||||||||| || |||||    
T  41419748 ggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagctcgggtggaaaaaaaaacaaatacaaggggaaatcggttgccataataacac 41419649  T
Q  159 cggctcgaacaaaaaccccttaaaaaccaccc 190  Q
    || |||||||||||||||||||||||||||||    
T  41419648 cgactcgaacaaaaaccccttaaaaaccaccc 41419617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 53 - 190
Target Start/End: Original strand, 14732334 - 14732473
Alignment:
Q  53 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggat-ggaaaaaataaacacaaggggaaatcggttgccac 151  Q
    ||||||||| ||||||| |||||||||||| |||||||||| || |||||||| |||||||| | ||||||||  || ||||||||||||||||| || |    
T  14732334 tttttgaaaaggcaaaatattattaaccaacaagcccgtgcgaggtgcactaataagctcgggtgggaaaaaaataatacaaggggaaatcggttaccgc 14732433  T
Q  152 -aaaacaccggctcgaacaaaaaccccttaaaaaccaccc 190  Q
     |||| ||| ||||||||||||||||||||||||||||||    
T  14732434 aaaaataccagctcgaacaaaaaccccttaaaaaccaccc 14732473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 72 - 190
Target Start/End: Original strand, 41378216 - 41378332
Alignment:
Q  72 ttattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccaca-aaacaccggctcgaacaa 170  Q
    ||||||||||| ||||||||| |||||||||||| |||||||| ||||||||    ||| ||||||||||||||||||||| |||| |||||||||| ||    
T  41378216 ttattaaccaacaagcccgtgaaagatgcactaataagctcgggtggaaaaat---aca-aaggggaaatcggttgccacacaaactccggctcgaataa 41378311  T
Q  171 aaacccc-ttaaaaaccaccc 190  Q
    ||||||| |||||||||||||    
T  41378312 aaacccctttaaaaaccaccc 41378332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 47 - 184
Target Start/End: Original strand, 22649053 - 22649193
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga-aaaaataaacacaaggggaaatcggt 145  Q
    ||||| |||||||| ||||||||  ||||||||||| |||||||||||||| | ||||| ||||| || | || ||||| | | | ||||||||||||||    
T  22649053 tttttttttttgaagcggcaaaattttattaaccaacaagcccgtgcaagaagtactaataagcttgggtagagaaaaaaacaaagaaggggaaatcggt 22649152  T
Q  146 tgcca--caaaacaccggctcgaacaaaaaccccttaaaaa 184  Q
    |||||  | ||||||||||| || |||||||||||| ||||    
T  22649153 tgccattccaaacaccggcttgatcaaaaacccctttaaaa 22649193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 43356803 - 43356750
Alignment:
Q  71 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 124  Q
    |||||||||||| ||| |||||||||||||||||| ||| |||| || ||||||    
T  43356803 attattaaccaataagtccgtgcaagatgcactaataagttcgggtgaaaaaaa 43356750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 5e-38; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 47 - 190
Target Start/End: Original strand, 40930818 - 40930961
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg-aaaaaataaacacaaggggaaatcggt 145  Q
    ||||| ||||||||| ||||||| |||||||||||| |||||||||||||| ||||||| |||||||| ||| |||||||| | ||||||||||||||||    
T  40930818 tttttttttttgaaatggcaaaatattattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaatacaaacaaggggaaatcggt 40930917  T
Q  146 tgccacaaaacaccggctcgaacaaaaaccccttaaaaaccaccc 190  Q
    || ||| ||||| |||||||||||||||| |||||||||||||||    
T  40930918 tgtcac-aaacaacggctcgaacaaaaactccttaaaaaccaccc 40930961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 47 - 183
Target Start/End: Original strand, 13959207 - 13959347
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg---aaaaaataaacacaaggggaaatcg 143  Q
    ||||| ||||||||||||||||| ||||||| |||| |||||||||||||| ||| ||| |||||||| |||   |||||||| | |||| || ||||||    
T  13959207 tttttttttttgaaacggcaaaatattattagccaacaagcccgtgcaagaagcaataataagctcgggtggaaaaaaaaatacaaacaaaggaaaatcg 13959306  T
Q  144 gttgccaca-aaacaccggctcgaacaaaaaccccttaaaa 183  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  13959307 gttgccacataaacaccggctcaaacaaaaaccccttaaaa 13959347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 51 - 190
Target Start/End: Original strand, 24200614 - 24200753
Alignment:
Q  51 tatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgcca 150  Q
    ||||||| || |||||||| |||||||| ||| ||| |||||||||| ||||||| ||||| || ||||||||| | | ||||||||||||||||||||     
T  24200614 tattttttaatcggcaaaatattattaatcaacaagtccgtgcaagaagcactaataagcttgggtggaaaaaaaacatacaaggggaaatcggttgccg 24200713  T
Q  151 c-aaaacaccggctcgaacaaaaaccccttaaaaaccaccc 190  Q
    | |||||||||||||||||||||| | ||||||||||||||    
T  24200714 caaaaacaccggctcgaacaaaaa-cacttaaaaaccaccc 24200753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 53 - 190
Target Start/End: Original strand, 25829259 - 25829399
Alignment:
Q  53 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg---aaaaaataaacacaaggggaaatcggttgcc 149  Q
    |||||||| ||||||| | ||||||||||| |||||||||||||| ||||||| |||||||| |||   |||||||| | ||||||||||||||||| ||    
T  25829259 tttttgaatcggcaaata-ttattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaaaatacaaacaaggggaaatcggtttcc 25829357  T
Q  150 aca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 190  Q
      | ||||||||||| ||| ||||||||||||||||||||||    
T  25829358 ctataaacaccggcttgaataaaaaccccttaaaaaccaccc 25829399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 46 - 190
Target Start/End: Original strand, 5200469 - 5200615
Alignment:
Q  46 ctttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataa-acacaaggggaaatcgg 144  Q
    |||||| ||||| || |||||||| |||||||||||| ||| ||||||||||  |||||| ||| | || |||| |||| || | ||||||| |||||||    
T  5200469 cttttttttttttaatcggcaaaatattattaaccaacaagtccgtgcaagaaacactaataagtttgggtggagaaaaaaacatacaagggaaaatcgg 5200568  T
Q  145 ttgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 190  Q
    ||||| || |||||||||||||||||||||||||||||||| |||||    
T  5200569 ttgccgcacaaacaccggctcgaacaaaaaccccttaaaaatcaccc 5200615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 54 - 190
Target Start/End: Complemental strand, 22839391 - 22839250
Alignment:
Q  54 ttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga--aaaaataaacacaaggggaaatcggttgcc-- 149  Q
    ||||||| |||||||| |||||||||||| |||||||||||||| ||||||| ||| |||||||||  ||||| | | | ||| ||||||||||||||      
T  22839391 ttttgaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaataagttcggatggaggaaaaaaacaaagaagaggaaatcggttgccat 22839292  T
Q  150 acaaaacaccggctcgaacaaaaa-ccccttaaaaaccaccc 190  Q
    | |||||| ||||||||||||||| ||| |||||||||||||    
T  22839291 ataaaacatcggctcgaacaaaaatccctttaaaaaccaccc 22839250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 47 - 190
Target Start/End: Original strand, 38086402 - 38086551
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg---aaaaaataaacacaaggggaaatcg 143  Q
    ||||| |||| ||| | |||||| |||||||||||| |||||||||||||| ||||||| |||||||| |||   |||||||| | | ||||| ||||||    
T  38086402 ttttttttttagaatcagcaaaatattattaaccaataagcccgtgcaagacgcactaataagctcgggtggagaaaaaaatacaaagaagggaaaatcg 38086501  T
Q  144 gttgccaca-aaacaccggctcgaacaaaaacccctt--aaaaaccaccc 190  Q
    ||||||| | |||| | ||||||||||||||||||||  |||||||||||    
T  38086502 gttgccatacaaactctggctcgaacaaaaacccctttaaaaaaccaccc 38086551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 10124935 - 10124866
Alignment:
Q  117 ggaaaaaataaacacaaggggaaatcggttgcc--acaaaacaccggctcgaacaaaaaccccttaaaaa 184  Q
    |||||||| | | ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  10124935 ggaaaaaaaacaaacaaggggaaatcggttgcctaacaaaacaccggctcgaacaaaaaccccttaaaaa 10124866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 190
Target Start/End: Original strand, 30836116 - 30836272
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaac----aagctcggatgga-------aaaaataaacacaagg 135  Q
    ||||| |||||||| |||||||| |||||||||||| |||| ||||| ||| |||||||     |||||||||||||       ||||| ||| | ||||    
T  30836116 tttttttttttgaatcggcaaaatattattaaccaacaagctcgtgcgagaagcactaattaataagctcggatggagaaaaaaaaaaaaaaaaagaagg 30836215  T
Q  136 ggaaatcggttgccaca-aaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 190  Q
    |||||||| ||||| || ||| ||||||||||||||||||||| |||||||||||||    
T  30836216 ggaaatcgattgccgcacaaataccggctcgaacaaaaacccctttaaaaaccaccc 30836272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 7845184 - 7845135
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaag 96  Q
    ||||| ||||||||||||||||| |||||||||||| |||||||||||||    
T  7845184 tttttttttttgaaacggcaaaatattattaaccaacaagcccgtgcaag 7845135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 44362918 - 44362994
Alignment:
Q  48 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaa 124  Q
    |||| |||||||||||| |||  |||||||||||| || || |||||||| ||||||| ||| ||||||||||||||    
T  44362918 ttttttttttgaaacggaaaattattattaaccaacaatcctgtgcaagaagcactaataagttcggatggaaaaaa 44362994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 584123 - 584187
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagct 111  Q
    ||||| || |||||||||||||| ||||||| |||| |||||||| ||||| ||||||| |||||    
T  584123 ttttttttgttgaaacggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 584187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 7845138 - 7845080
Alignment:
Q  131 caaggggaaatcggttgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 190  Q
    |||||||||||||||||| |||  |||||||||||||||  || |||||||||||||||||    
T  7845138 caaggggaaatcggttgcaacattaacaccggctcgaac--aatccccttaaaaaccaccc 7845080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 63 - 184
Target Start/End: Complemental strand, 16572198 - 16572074
Alignment:
Q  63 ggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg--aaaaaataaacacaaggggaaatcggttgccac-aaaacacc 159  Q
    ||||||| |||||||||||| |||||||||| ||||||||||| |||||||| |||  |||||||||| |||||||||||||||||||| | ||||||||    
T  16572198 ggcaaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtggaaaaaaaataaatacaaggggaaatcggttgccgcaaaaacacc 16572099  T
Q  160 ggctcgaacaaaaaccccttaaaaa 184  Q
    || |||||||||| ||| |||||||    
T  16572098 ggttcgaacaaaacccctttaaaaa 16572074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 48 - 182
Target Start/End: Original strand, 47571560 - 47571694
Alignment:
Q  48 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg-gaaaaaataaacacaaggggaaatcggtt 146  Q
    |||| |||||||| |||||||| |||||||||||| || |||||| |||  ||||||| |||||||| ||  |||||||||| ||||||| |||| ||||    
T  47571560 ttttttttttgaatcggcaaaatattattaaccaacaaacccgtggaaggagcactaataagctcgggtgaaaaaaaataaatacaagggaaaattggtt 47571659  T
Q  147 gccacaaaacaccggctcgaacaaaaaccccttaaa 182  Q
    ||||| |||||||||||| |||||||||||||||||    
T  47571660 gccac-aaacaccggctcaaacaaaaaccccttaaa 47571694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 47 - 190
Target Start/End: Complemental strand, 32183425 - 32183275
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaag-aagcccgtgcaagatgcactaacaagctcggatggaa-aaaataaacaca--aggggaaatc 142  Q
    ||||| ||||| || |||||||| ||||||||||||  |||||||||||||  ||||||| |||||||| ||||| |||| ||||| |  ||||||||||    
T  32183425 tttttttttttaaatcggcaaaatattattaaccaaacaagcccgtgcaaggcgcactaataagctcgggtggaagaaaaaaaacaaagaaggggaaatc 32183326  T
Q  143 ggttgccaca-aaacaccggctcgaacaaaaacccctt--aaaaaccaccc 190  Q
    |||||||| | |||||||||||||||||||||||||||  |||||||||||    
T  32183325 ggttgccatacaaacaccggctcgaacaaaaacccctttaaaaaaccaccc 32183275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 53 - 149
Target Start/End: Original strand, 15186975 - 15187072
Alignment:
Q  53 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga-aaaaataaacacaaggggaaatcggttgcc 149  Q
    |||||||| |||||||| |||||||||||| |||||||||||||||||||||| ||||| || |||| |||||  || ||||||||||||||||||||    
T  15186975 tttttgaatcggcaaaatattattaaccaacaagcccgtgcaagatgcactaataagcttgggtggataaaaaagaatacaaggggaaatcggttgcc 15187072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 53 - 187
Target Start/End: Original strand, 55133102 - 55133233
Alignment:
Q  53 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccaca 152  Q
    ||||||||||| ||||| ||||||||||   |||||||||||||| ||||||| || |||||||| ||| || | | |||| ||||||| | ||||||||    
T  55133102 tttttgaaacgacaaaatattattaacc---aagcccgtgcaagaagcactaataaactcggatgaaaagaaaacaaacaa-gggaaattgattgccaca 55133197  T
Q  153 -aaacaccggctcgaacaaaaaccccttaaaaacca 187  Q
     ||||| | |||||||||||||||| ||||||||||    
T  55133198 caaacatcagctcgaacaaaaaccctttaaaaacca 55133233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 190
Target Start/End: Original strand, 25641263 - 25641407
Alignment:
Q  53 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg----aaaaaataaacacaaggggaaatcggttgc 148  Q
    |||||||| ||||||||  ||||||||||| |||||||||||||| ||||||| ||||| || |||    |||||||| | | |||||||||| ||||||    
T  25641263 tttttgaatcggcaaaatgttattaaccaacaagcccgtgcaagaagcactaaaaagcttgggtggagaaaaaaaatacaaagaaggggaaattggttgc 25641362  T
Q  149 caca-aaacaccggctcgaacaaaaacccctt--aaaaaccaccc 190  Q
    || |  |||| |||||||||||||||||| ||  |||||||||||    
T  25641363 catactaacatcggctcgaacaaaaacccttttaaaaaaccaccc 25641407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 191
Target Start/End: Original strand, 16662301 - 16662441
Alignment:
Q  53 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgcc--a 150  Q
    |||||||| | |||||| |||||||||||| |||||||||| ||| ||||||| |||||  | ||||||||| |   | ||||| ||||| ||||||  |    
T  16662301 tttttgaatcagcaaaatattattaaccaacaagcccgtgcgagaagcactaataagctaaggtggaaaaaa-actaagaagggaaaatctgttgccata 16662399  T
Q  151 caaaacaccggctcgaacaaaaacccc-ttaaaaaccaccct 191  Q
    |||||||| |||||| ||||||||||| ||||||||||||||    
T  16662400 caaaacactggctcgtacaaaaacccctttaaaaaccaccct 16662441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 42390766 - 42390906
Alignment:
Q  53 tttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga---aaaaataaacacaaggggaaatcggttgcc 149  Q
    |||||||| |||| |||  |||||  |||| |||||||||||||| | ||||| |||||||| ||||   ||||| ||| | ||||   |||||||||||    
T  42390766 tttttgaatcggctaaattttattttccaacaagcccgtgcaagacgtactaataagctcgggtggagaaaaaaacaaataaaaggaacaatcggttgcc 42390865  T
Q  150 ac-aaaacaccggctcgaacaaaaaccccttaaaaaccacc 189  Q
     | ||||||||||||| ||||||||||||||||||||||||    
T  42390866 gctaaaacaccggctcaaacaaaaaccccttaaaaaccacc 42390906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 45511390 - 45511440
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaaga 97  Q
    ||||| |||||||| | |||||| |||||||||||| ||||||||||||||    
T  45511390 tttttttttttgaatcagcaaaatattattaaccaacaagcccgtgcaaga 45511440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 71 - 190
Target Start/End: Original strand, 23172985 - 23173107
Alignment:
Q  71 attattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg--aaaaaataaacacaaggggaaatcggttgccaca-aaacaccggctcgaa 167  Q
    |||||||||||| |||||||||||||| ||||||| |||||||| |||  |||||||| | |||||| |||||| ||||||  | |||||||||||||||    
T  23172985 attattaaccaacaagcccgtgcaagaagcactaataagctcgggtggaaaaaaaatacaaacaaggagaaatcagttgccctataaacaccggctcgaa 23173084  T
Q  168 caaaaaccccttaaaaaccaccc 190  Q
    ||||| |||||||||||||||||    
T  23173085 caaaacccccttaaaaaccaccc 23173107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 65 - 190
Target Start/End: Complemental strand, 22887337 - 22887211
Alignment:
Q  65 caaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaa-aaaataaacacaaggggaaatcggttgccacaaaacaccggct 163  Q
    ||||| |||||||||||| |||||||||| ||||||||||| |||||||| ||| | |||| ||| | ||||| ||||| |||||||||||| || || |    
T  22887337 caaaatattattaaccaacaagcccgtgcgagatgcactaataagctcgggtgggagaaaaaaaatataagggaaaatcagttgccacaaaagacaggtt 22887238  T
Q  164 cgaacaaaaaccccttaaaaaccaccc 190  Q
    | |||||||||||||||||||||||||    
T  22887237 caaacaaaaaccccttaaaaaccaccc 22887211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 47 - 190
Target Start/End: Original strand, 9931785 - 9931935
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg-------aaaaaataaacacaaggggaa 139  Q
    ||||| |||||||||||| ||| | ||||||||||| |||||||||||||| ||||||||||||| || |||       |||||||| | || |||||||    
T  9931785 tttttttttttgaaacggtaaata-ttattaaccaacaagcccgtgcaagaagcactaacaagcttgggtgggaagaaaaaaaaatacaaacgaggggaa 9931883  T
Q  140 atcggttgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccc 190  Q
    |||||||||| || ||||||| |||||||||||||| ||| |||||||||||    
T  9931884 atcggttgccgcacaaacaccagctcgaacaaaaacacctcaaaaaccaccc 9931935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 65 - 199
Target Start/End: Complemental strand, 25539947 - 25539810
Alignment:
Q  65 caaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaata----aacacaaggggaaatcggttgccacaaaacaccg 160  Q
    ||||| ||||||| |||| |||||||||||||| ||| ||| |||||||| || |||||| |    || ||||| |||||||||||||||  ||||| ||    
T  25539947 caaaatattatta-ccaacaagcccgtgcaagaagcattaataagctcgggtgaaaaaaaaacaaaaatacaagaggaaatcggttgccatcaaacatcg 25539849  T
Q  161 gctcgaacaaaaaccccttaaaaaccaccctaacactaa 199  Q
    |||||||||||||||||||||||||||||| || |||||    
T  25539848 gctcgaacaaaaaccccttaaaaaccaccccaaaactaa 25539810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 47 - 184
Target Start/End: Complemental strand, 10431204 - 10431063
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgga-aaaaataaac--acaaggggaaatcg 143  Q
    ||||| |||||||||||| |||| |||||||| ||| || ||||||||||| ||| ||| ||| |||| |||| ||||| ||||  |||||| |||||||    
T  10431204 tttttttttttgaaacggaaaaatattattaatcaacaaacccgtgcaagaagcattaataagttcgggtggagaaaaaaaaacaaacaaggagaaatcg 10431105  T
Q  144 gttgccaca-aaacaccggctcgaacaaaaaccccttaaaaa 184  Q
    ||||||||| |||||||| |||||||||||||| | ||||||    
T  10431104 gttgccacacaaacaccgactcgaacaaaaacctcataaaaa 10431063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 184
Target Start/End: Original strand, 819134 - 819254
Alignment:
Q  64 gcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaata-aacacaaggggaaatcggttgccacaaaacaccggc 162  Q
    |||||| ||||||| |||| ||| ||||| |||| ||||||| ||| |||| ||||||||| | || |||| |||||||||||||||||||| ||||  |    
T  819134 gcaaaatattattacccaataagtccgtgtaagaagcactaataagttcgggtggaaaaaaaataaaacaaagggaaatcggttgccacaaa-caccaac 819232  T
Q  163 tcgaacaaaaaccccttaaaaa 184  Q
    ||||||||||||||||||||||    
T  819233 tcgaacaaaaaccccttaaaaa 819254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 48 - 190
Target Start/End: Original strand, 3677779 - 3677924
Alignment:
Q  48 ttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaata----aacacaaggggaaatcg 143  Q
    |||| |||||||| | |||| | ||||||| |||| |||||| ||| ||||||||||| |||||||| ||||||||| |    || |||||||  |||||    
T  3677779 ttttttttttgaatcagcaatatattatta-ccaacaagcccatgcgagatgcactaataagctcgggtggaaaaaaaacaagaatacaagggacaatcg 3677877  T
Q  144 gttgccacaaaacaccggctcgaacaaaaaccccttaaaaaccaccc 190  Q
    |||||| ||| |||| ||||| |||||||||||||||||||||||||    
T  3677878 gttgccgcaatacactggctcaaacaaaaaccccttaaaaaccaccc 3677924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 47 - 175
Target Start/End: Original strand, 42241577 - 42241708
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggat--ggaaaaaataaacacaaggggaaatcgg 144  Q
    ||||| ||||| || |||||||| |||||||||||| ||| ||| |||||||||||||| ||||||||||  | |||||||| | | |||||||||||||    
T  42241577 ttttttttttttaatcggcaaaatattattaaccaataagtccgggcaagatgcactaataagctcggatgagaaaaaaatacaaagaaggggaaatcgg 42241676  T
Q  145 ttgccaca-aaacaccggctcgaacaaaaacc 175  Q
    | |||| | |||| |||||| |||||||||||    
T  42241677 tcgccatacaaactccggcttgaacaaaaacc 42241708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 2292222 - 2292168
Alignment:
Q  132 aaggggaaatcggttgcc--acaaaacaccggctcgaacaaaaaccccttaaaaa 184  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  2292222 aaggggaaatcggttgcctaacaaaacaccggctcgaacaaaaaccccttaaaaa 2292168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 9597742 - 9597800
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaa 105  Q
    ||||| |||||||| |||||||| |||||||||||| ||||| |||||||| |||||||    
T  9597742 tttttttttttgaatcggcaaaatattattaaccaacaagcctgtgcaagaagcactaa 9597800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 47 - 184
Target Start/End: Original strand, 33112703 - 33112844
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagc-tcggatggaaaaaataaaca--caaggggaaatcg 143  Q
    ||||| |||||||| |||||||| |||||||||||| |||||||||||||| ||||||| |||| | ||  |||||||| |||||  |||||||||||||    
T  33112703 tttttttttttgaatcggcaaaatattattaaccaacaagcccgtgcaagacgcactaaaaagcttgggggggaaaaaaaaaacaagcaaggggaaatcg 33112802  T
Q  144 gttgccaca-aaacaccggctcgaacaaaaaccccttaaaaa 184  Q
    ||||||| | ||||   |||||||||||||||||||||||||    
T  33112803 gttgccatacaaactttggctcgaacaaaaaccccttaaaaa 33112844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 53 - 190
Target Start/End: Complemental strand, 10247049 - 10246910
Alignment:
Q  53 tttttgaaacggcaaaaa-attattaaccaagaagcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaaggggaaatcggttgccac 151  Q
    ||||| || ||||||||| |||||||||||| |||||||||||||| ||||||| | | || | |||| |||| | | | ||||| |||||||||| |||    
T  10247049 ttttttaatcggcaaaaatattattaaccaacaagcccgtgcaagaagcactaaaaggttcaggtggagaaaaaacaaagaagggaaaatcggttgtcac 10246950  T
Q  152 aaaacaccggctcgaacaaaaacccc-ttaaaaaccaccc 190  Q
    | |||||||||||||||||||||||| |||||||||||||    
T  10246949 acaacaccggctcgaacaaaaacccctttaaaaaccaccc 10246910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 46 - 278
Target Start/End: Complemental strand, 11546912 - 11546685
Alignment:
Q  46 ctttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatg-gaaaaaataaacacaaggggaaatcgg 144  Q
    |||||| ||||| ||||||||||| |||||||||  | |||||||||||||  ||||||| |||||||| || ||||||| | | | |||| ||||||||    
T  11546912 cttttttttttttaaacggcaaaatattattaactgacaagcccgtgcaagtagcactaataagctcgggtgagaaaaaaaacaaagaaggagaaatcgg 11546813  T
Q  145 ttgccaca-aaacaccggctcgaacaaaaaccccttaaaaaccaccctaacactaaggcactaactaccggacacaaaaataatgacgcagacatataca 243  Q
    ||| || | |||||||||||||||||||||| |||||||||     ||| | |||| | |  |||||||    |||| | ||||||||||||||||||||    
T  11546812 ttgtcatacaaacaccggctcgaacaaaaactccttaaaaa----actacccctaaagaaggaactacc---tacaagagtaatgacgcagacatataca 11546720  T
Q  244 aatgacaatccgcaagcatacccctgcatcaacac 278  Q
     |||||||||| || | |||||||||| |||||||    
T  11546719 tatgacaatcctcatgaatacccctgcgtcaacac 11546685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 56 - 191
Target Start/End: Complemental strand, 6575860 - 6575720
Alignment:
Q  56 ttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg----aaaaaataaacacaaggggaaatcggttgccac 151  Q
    ||||| |||||||| |||||||| ||| |||||||||||||| ||||||| ||| |||| |||    |||||||| |||||| || ||||| |||| ||     
T  6575860 ttgaatcggcaaaatattattaatcaacaagcccgtgcaagaagcactaataagttcgggtggaagaaaaaaatacacacaaaggaaaatcagttgtcat 6575761  T
Q  152 a-aaacaccggctcgaacaaaaaccccttaaaaaccaccct 191  Q
    | ||||| ||||||||||||||||| |||||||||||||||    
T  6575760 acaaacatcggctcgaacaaaaacctcttaaaaaccaccct 6575720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 48 - 190
Target Start/End: Complemental strand, 15859244 - 15859093
Alignment:
Q  48 ttttatttttgaaacggcaaaaaattattaaccaaga--agcccgtgcaagatgcactaacaagctcggatggaaaaaataaacacaa----ggggaaat 141  Q
    |||| |||| ||| |||||||| |||||||| ||| |  ||||||||||||  ||||||| |||||||| |||| |||| ||| ||||    ||||||||    
T  15859244 tttttttttagaatcggcaaaatattattaatcaaaacaagcccgtgcaaggcgcactaataagctcgggtggagaaaaaaaaaacaaagaaggggaaat 15859145  T
Q  142 cggttgccaca-aaacaccggctcgaacaaaaacccctt--aaaaaccaccc 190  Q
    ||||||||| | |||||||||||||||||||||||||||  |||||||||||    
T  15859144 cggttgccaaacaaacaccggctcgaacaaaaacccctttaaaaaaccaccc 15859093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 47 - 278
Target Start/End: Complemental strand, 34761306 - 34761080
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagctcggatgg--aaaaaataaacacaaggggaaatcgg 144  Q
    ||||| |||||||||||||||| | ||||||| | | |||||||||||||  ||||||| |||||||| |||  |||||||| | | |||  ||||||||    
T  34761306 tttttttttttgaaacggcaaata-ttattaaacgacaagcccgtgcaagtagcactaataagctcgggtgggaaaaaaatacaaagaagaagaaatcgg 34761208  T
Q  145 ttgccaca-aaacaccggctcgaacaaaaacccctt-aaaaaccaccctaacactaaggcactaactaccggacacaaaaataatgacgcagacatatac 242  Q
    ||| || | |||||||| ||||||||||||| |||| |||||||||||     |||| | |  |||||||    |||| | ||||||||||| |||||||    
T  34761207 ttgtcatacaaacaccgactcgaacaaaaactccttaaaaaaccaccc-----ctaaagaaggaactacc---tacaacagtaatgacgcaggcatatac 34761116  T
Q  243 aaatgacaatccgcaagcatacccctgcatcaacac 278  Q
    | |||||||||| || | |||||||||| |||||||    
T  34761115 atatgacaatcctcatgaatacccctgcgtcaacac 34761080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 131 - 190
Target Start/End: Complemental strand, 33984814 - 33984753
Alignment:
Q  131 caaggggaaatcggttgccaca-aaacaccggctcgaacaaaaacccctt-aaaaaccaccc 190  Q
    |||||||||||||||||||| | |||||| || ||||||||||||||||| |||||||||||    
T  33984814 caaggggaaatcggttgccatacaaacactggttcgaacaaaaaccccttcaaaaaccaccc 33984753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 105
Target Start/End: Original strand, 12754422 - 12754465
Alignment:
Q  62 cggcaaaaaattattaaccaagaagcccgtgcaagatgcactaa 105  Q
    ||||||||||||||||||||| || ||||||||||| |||||||    
T  12754422 cggcaaaaaattattaaccaacaaacccgtgcaagacgcactaa 12754465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 12883 - 12947
Alignment:
Q  47 tttttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaacaagct 111  Q
    ||||| || |||||||||||||| ||||||| |||| |||||||| ||||| ||||||| |||||    
T  12883 ttttttttgttgaaacggcaaaatattattagccaacaagcccgtacaagaagcactaataagct 12947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 8012 - 7956
Alignment:
Q  49 tttatttttgaaacggcaaaaaattattaaccaagaagcccgtgcaagatgcactaa 105  Q
    ||||||||| || |||||||| |||||||||||| |||||  ||||| |||||||||    
T  8012 tttatttttaaatcggcaaaatattattaaccaacaagcctatgcaaaatgcactaa 7956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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