View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_29 (Length: 426)
Name: NF1435_low_29
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_29 |
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| [»] scaffold0349 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 86 - 422
Target Start/End: Original strand, 27648425 - 27648760
Alignment:
| Q |
86 |
tacttacattgccagtacaaagttctgccaaagatgcatccaagggaccagatatcaatcttcttgtcatatgaaatcccgagaataagctcaggagcac |
185 |
Q |
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||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
27648425 |
tacttacattgccggtacaaagttctgccaa-gatgcatccaagggaccagatatcaatcttcttgtcatatgaaagcccgagaataacctcaggagcac |
27648523 |
T |
|
| Q |
186 |
gataggacctggactgaacatatgagcaaaggtgatctgtctcaaaacaactacctccaagatgaatgaccttcacctcacatcggctgtagcttttaac |
285 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
27648524 |
gataggacctcgactgaacatatgagcaaaggtgatctgtctcaaaacaactacttccaagatcaatgaccttcacctcacatcggtcgtagcttttaac |
27648623 |
T |
|
| Q |
286 |
caaaatattctccggcttcaagtaacaatgtattagtccaaggttatgtaaatactgaagtgcttccaaagatttaatggtaattgactgcaataacaaa |
385 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||||||||| |||||||||||| |
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| T |
27648624 |
caaaatattctccggcttcaagtcgcaatgtgttagtccaaggttatgtaagtactgaagtgcttccaaacattgaatggtaattgattgcaataacaaa |
27648723 |
T |
|
| Q |
386 |
tcaagacaagtttctaatgagacaatagtataatcta |
422 |
Q |
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|||||||||||||||||||||||| ||||| |||||| |
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| T |
27648724 |
tcaagacaagtttctaatgagacagtagtagaatcta |
27648760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 86 - 404
Target Start/End: Original strand, 27708610 - 27708927
Alignment:
| Q |
86 |
tacttacattgccagtacaaagttctgccaaagatgcatccaagggaccagatatcaatcttcttgtcatatgaaatcccgagaataagctcaggagcac |
185 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||| |
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| T |
27708610 |
tacttacattgccagtacaaagttctgccaa-gatgcatccaagggaccagatatcaatcttcttgtcgtatgaaagcccgagaataacctcgggagcac |
27708708 |
T |
|
| Q |
186 |
gataggacctggactgaacatatgagcaaaggtgatctgtctcaaaacaactacctccaagatgaatgaccttcacctcacatcggctgtagcttttaac |
285 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27708709 |
tataggacctagactgaacatatgagcaaaggtgatctgtctcaaaacaactacttccaagatcaatgaccttcacctcacatcggctgtagcttttaac |
27708808 |
T |
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| Q |
286 |
caaaatattctccggcttcaagtaacaatgtattagtccaaggttatgtaaatactgaagtgcttccaaagatttaatggtaattgactgcaataacaaa |
385 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||| |
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| T |
27708809 |
caaaatattctccggcttcaagtcacaatgtattagtccaaggttatgtaaatactgaagtgcttccaaacattgaatggtaattgactgcaaaaacaaa |
27708908 |
T |
|
| Q |
386 |
tcaagacaagtttctaatg |
404 |
Q |
| |
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||||||||||||| ||||| |
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| T |
27708909 |
tcaagacaagtttataatg |
27708927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 86 - 404
Target Start/End: Original strand, 27728436 - 27728753
Alignment:
| Q |
86 |
tacttacattgccagtacaaagttctgccaaagatgcatccaagggaccagatatcaatcttcttgtcatatgaaatcccgagaataagctcaggagcac |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||| |
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| T |
27728436 |
tacttacattgccagtacaaagttctgccaa-gatgcatccaagggaccagatatcaatcttcttgtcgtatgaaagcccgagaataacctcgggagcac |
27728534 |
T |
|
| Q |
186 |
gataggacctggactgaacatatgagcaaaggtgatctgtctcaaaacaactacctccaagatgaatgaccttcacctcacatcggctgtagcttttaac |
285 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27728535 |
tataggacctagactgaacatatgagcaaaggtgatctgtctcaaaacaactacttccaagatcaatgaccttcacctcacatcggctgtagcttttaac |
27728634 |
T |
|
| Q |
286 |
caaaatattctccggcttcaagtaacaatgtattagtccaaggttatgtaaatactgaagtgcttccaaagatttaatggtaattgactgcaataacaaa |
385 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||| |
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| T |
27728635 |
caaaatattctccggcttcaagtcacaatgtattagtccaaggttatgtaaatactgaagtgcttccaaacattgaatggtaattgactgcaaaaacaaa |
27728734 |
T |
|
| Q |
386 |
tcaagacaagtttctaatg |
404 |
Q |
| |
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||||||||||||| ||||| |
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| T |
27728735 |
tcaagacaagtttataatg |
27728753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 229 - 382
Target Start/End: Original strand, 27597646 - 27597799
Alignment:
| Q |
229 |
aaaacaactacctccaagatgaatgaccttcacctcacatcggctgtagcttttaaccaaaatattctccggcttcaagtaacaatgtattagtccaagg |
328 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
27597646 |
aaaacaactacttccaagatcaatgaccttcacctcacatcggctgtagcttttaaccaaaatattctccggcttcaagtcacaatgtattagtccaagg |
27597745 |
T |
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| Q |
329 |
ttatgtaaatactgaagtgcttccaaagatttaatggtaattgactgcaataac |
382 |
Q |
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|||||||||||||||||||||||| || ||| |||||||||||||||||||||| |
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| T |
27597746 |
ttatgtaaatactgaagtgcttcctaatattgaatggtaattgactgcaataac |
27597799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0349 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: scaffold0349
Description:
Target: scaffold0349; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 86 - 404
Target Start/End: Original strand, 7015 - 7332
Alignment:
| Q |
86 |
tacttacattgccagtacaaagttctgccaaagatgcatccaagggaccagatatcaatcttcttgtcatatgaaatcccgagaataagctcaggagcac |
185 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||| ||||||| |
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| T |
7015 |
tacttacattgccagtacaaagttctgccaa-gatgcatccaagggaccagatatcaatcttcttgtcgtatgaaagcccgagaataacctcgggagcac |
7113 |
T |
|
| Q |
186 |
gataggacctggactgaacatatgagcaaaggtgatctgtctcaaaacaactacctccaagatgaatgaccttcacctcacatcggctgtagcttttaac |
285 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7114 |
aataggacctagactgaacatatgagcaaaggtgatctgtctcaaaacaactacttccaagatcaatgaccttcacctcacatcggctgtagcttttaac |
7213 |
T |
|
| Q |
286 |
caaaatattctccggcttcaagtaacaatgtattagtccaaggttatgtaaatactgaagtgcttccaaagatttaatggtaattgactgcaataacaaa |
385 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||| |
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| T |
7214 |
caaaatattctccggcttcaagtcacaatgtattagtccaaggttatgtaaatactgaagtgcttccaaacattgaatggtaattgactgcaaaaacaaa |
7313 |
T |
|
| Q |
386 |
tcaagacaagtttctaatg |
404 |
Q |
| |
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||||||||||||| ||||| |
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|
| T |
7314 |
tcaagacaagtttataatg |
7332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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