View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_3 (Length: 673)
Name: NF1435_low_3
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 176 - 486
Target Start/End: Original strand, 32697015 - 32697339
Alignment:
| Q |
176 |
gtaatttatctttgaatatgaaaagttgtagatgtcaatacacaatattttaggaagatccacatacaaaa--tggacactttaaattcattaaccactt |
273 |
Q |
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| T |
32697015 |
gtaatttatctttgaatatgaaaagttgtagatgtcaatacacaatattttaggaagatccacatacaaaaaatagacactttaaattcattaaccactt |
32697114 |
T |
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| Q |
274 |
ttcttaatatatgttgaa---------------tataaaaaggactactataaaaagggattggaattgacaaattttgaactttcaaagagttgacata |
358 |
Q |
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| T |
32697115 |
ttcttaatatatgttgaaaaaattaaaggatattataaaaaggactactataaaaagggattggaattgacaaattttgaactttcaaagagttgacata |
32697214 |
T |
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| Q |
359 |
aatttctaattttgtttctttaacaaatacaaatgtcataagacannnnnnnagcattttccgtagaaaaactactgctccagtacaacaaaaacaagct |
458 |
Q |
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| T |
32697215 |
aatttctaattttgtttctttaacaaatacaaatgtcataagacatttttttagcattttccatagaaaaactactgctccagtacaacaaaaacaagct |
32697314 |
T |
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| Q |
459 |
atctacgataaaggggtagcattttggt |
486 |
Q |
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| T |
32697315 |
at---cgataaaggggtagtactttggt |
32697339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 523 - 659
Target Start/End: Original strand, 32697412 - 32697548
Alignment:
| Q |
523 |
tcacttataacattctggtggactaatatcaccagccaccttatcacccaaatactatccaaacaaagacagacagaaaaaatgtttgatttatgattca |
622 |
Q |
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| T |
32697412 |
tcacttatgacattatgatcgactaatatcaccaaccacattatcactcaaatactgtccagacaaagacagacagacaaaatgtttgatttatgattca |
32697511 |
T |
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| Q |
623 |
cgcattttatttcttttttaagtggcagtgatgattt |
659 |
Q |
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| T |
32697512 |
cgcattttatttcttttttaagtggcagtgatgattt |
32697548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 32696840 - 32696928
Alignment:
| Q |
1 |
gttgtacaaatatcatttctctaaaagaacaaaatcctccatccataattatggctctatttgaagaaaagaaaaagtttttcctctaa |
89 |
Q |
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| T |
32696840 |
gttgtacaaatatcatttctctaaaagaacaaaatcctccatccctaattatggctcaatttgaagaaaagaaaaagtttttcctctaa |
32696928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 220 - 287
Target Start/End: Complemental strand, 1829803 - 1829736
Alignment:
| Q |
220 |
atattttaggaagatccacatacaaaatggacactttaaattcattaaccacttttcttaatatatgt |
287 |
Q |
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| T |
1829803 |
atattataagaagatctacatacaaaaagaacacattaaattcactaaccacttttcttaatatatgt |
1829736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 43057455 - 43057427
Alignment:
| Q |
1 |
gttgtacaaatatcatttctctaaaagaa |
29 |
Q |
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| T |
43057455 |
gttgtacaaatatcatttctctaaaagaa |
43057427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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