View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_33 (Length: 407)
Name: NF1435_low_33
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 390
Target Start/End: Complemental strand, 3249243 - 3248875
Alignment:
| Q |
1 |
tttgatgcataaagaaactgctgagcctgtgaactcccctgttaagattttcgaccttgaaacaaccaatactaaaaatacacattctgaacaggctgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3249243 |
tttgatgcataaagaaactgctgagcctgtgaactcccctgttaagattttcgaccttgaaacaaccaatactaaaaatacacattctgaacaggctgct |
3249144 |
T |
|
| Q |
101 |
actgaactacacaacataaccaactcccctgatttccatttacgacttggaagcttgaatgaactacatgacacagagaaattgcatgaggaagaaaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3249143 |
actgaactacacaacataaccaactcccctgatttccatttacgacttggaagcttgaatgaactacatgacacagagaaattgcatgaggaagaagatg |
3249044 |
T |
|
| Q |
201 |
aggatgatgttgtgatttctaatcctctttttgggatgaaatcaaaatcaccctctgctttaactctacataatccttttgacaggttgcaggaagatag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||| |
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| T |
3249043 |
aggatgatgttgtgatttctaatcctctttttgggatgaactcaa---------------------tacataatacttttgacaggttgcaggaagatag |
3248965 |
T |
|
| Q |
301 |
tacaattcatctcgaggagaaccctctaatggatcagattgaatgtcaacctgttggtgatcaggtgcatgctattttagagcctgttct |
390 |
Q |
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| T |
3248964 |
tacaattcatctcgaggagaaccctctaatggatcagattgaatgtcaacctgctggtgatcaggtgcatgctattttagagcctgttct |
3248875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 211 - 390
Target Start/End: Original strand, 36905621 - 36905800
Alignment:
| Q |
211 |
tgtgatttctaatcctctttttgggatgaaatcaaaatcaccctctgctttaactctacataatccttttgacaggttgcaggaagatagtacaattcat |
310 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
36905621 |
tgtgatttcaaatcctctttttgggatgaactcaaaatcaccctctgctttaactctacataatccttttaacaggttgcaggaagatagtgcaattcat |
36905720 |
T |
|
| Q |
311 |
ctcgaggagaaccctctaatggatcagattgaatgtcaacctgttggtgatcaggtgcatgctattttagagcctgttct |
390 |
Q |
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|| ||||||||||||||||||||||||||| |||||||||||| | | ||||||||||||||||||| ||||||||||| |
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| T |
36905721 |
cttgaggagaaccctctaatggatcagattcaatgtcaacctgctactaatcaggtgcatgctattttggagcctgttct |
36905800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 36905387 - 36905596
Alignment:
| Q |
1 |
tttgatgcataaagaaactgctgagcctgtgaactcccctgttaagattttcgaccttgaaacaaccaatactaaaaatacacattctgaacaggctgct |
100 |
Q |
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||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||| ||| ||||||||||| |
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| T |
36905387 |
tttgatgcataaagatattgctgagtttgtgaactcccctgttaagattttcgaccttgaaaccaccaatactgaaaatgcacaatctaaacaggctgct |
36905486 |
T |
|
| Q |
101 |
actgaactacacaacataaccaactcccctgatttccatttacgacttggaagcttgaatgaactacatgacacagagaaattgcatgaggaagaaaatg |
200 |
Q |
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||||||||||||||||||||||| ||| |||||| |||||||| ||||||||||||||||| |||||| |||||| || ||||||||||||| ||||| |
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| T |
36905487 |
actgaactacacaacataaccaattcctctgattctcatttacgtcttggaagcttgaatgacctacataacacaggtaacttgcatgaggaaggaaatg |
36905586 |
T |
|
| Q |
201 |
aggatgatgt |
210 |
Q |
| |
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|||||||||| |
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| T |
36905587 |
aggatgatgt |
36905596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 146; Significance: 9e-77; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 28102616 - 28102423
Alignment:
| Q |
1 |
tttgatgcataaagaaactgctgagcctgtgaactcccctgttaagattttcgaccttgaaacaaccaatactaaaaatacacattctgaacaggctgct |
100 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| ||||||| | |||||||||| ||||||||||||||| |
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| T |
28102616 |
tttgatgcataaagaaactgatgagcatgtgaactcccctgttaagattttcgaccttgaaaccaccaataatgaaaatacacaatctgaacaggctgct |
28102517 |
T |
|
| Q |
101 |
actgaactacacaacataaccaactcccctgatttccatttacgacttggaagcttgaatgaactacatgacacagagaaattgcatgaggaag |
194 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| | ||||||||||||| |
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| T |
28102516 |
actgaactacacaacataaccaactcccctgattctcatttacgacttggaagcttgaatgacctacatgacaccgagtacttgcatgaggaag |
28102423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 211 - 390
Target Start/End: Complemental strand, 28102382 - 28102203
Alignment:
| Q |
211 |
tgtgatttctaatcctctttttgggatgaaatcaaaatcaccctctgctttaactctacataatccttttgacaggttgcaggaagatagtacaattcat |
310 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
28102382 |
tgtgattttaaatcctctttttgggatgaactcaaaatcaccctctgctttaactctacataatccttttgatgggttgcaggaagatagtgcaattcat |
28102283 |
T |
|
| Q |
311 |
ctcgaggagaaccctctaatggatcagattgaatgtcaacctgttggtgatcaggtgcatgctattttagagcctgttct |
390 |
Q |
| |
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|| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
28102282 |
cttgaggagaaccctctaatggatcagattcaatgtcaacctgttgctgatcaggtgcatgctattttggagcctgttct |
28102203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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