View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_35 (Length: 403)
Name: NF1435_low_35
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 209 - 387
Target Start/End: Original strand, 40455139 - 40455317
Alignment:
| Q |
209 |
tgtcatctcctcaaccaatgcagcagtccagttaggatctgccaaagctttatgtacattactaggaatagaaatcgaggataattgagataaaaaagat |
308 |
Q |
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| T |
40455139 |
tgtcatctcctcaaccattgcagcagtccagttaggatctgctaaagcttcatgtacattactaggaatagaaatcgaggataattgagatacaaaagat |
40455238 |
T |
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| Q |
309 |
gcatatgaccgagataacttgtgagatgacacataattactaatgggatattttactttggattggaggtatggttcat |
387 |
Q |
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| T |
40455239 |
gcatatgaccgagataacttgtgagatgacacataattactaatgggatattttactttggattggaggtctggttcat |
40455317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 155; Significance: 4e-82; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 205 - 387
Target Start/End: Complemental strand, 32202513 - 32202331
Alignment:
| Q |
205 |
aagttgtcatctcctcaaccaatgcagcagtccagttaggatctgccaaagctttatgtacattactaggaatagaaatcgaggataattgagataaaaa |
304 |
Q |
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||||||||||||||||||||| ||||||||| |||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32202513 |
aagttgtcatctcctcaaccattgcagcagttcagttaggatctgctaaagcttcatatacattactaggaatagaaatcgaggataattgagatacaaa |
32202414 |
T |
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| Q |
305 |
agatgcatatgaccgagataacttgtgagatgacacataattactaatgggatattttactttggattggaggtatggttcat |
387 |
Q |
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| T |
32202413 |
agatgcatatgaccgagataacttgtgagatgacacataattactaatgggatattttactttggattggaggtctggttcat |
32202331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 35918043 - 35917930
Alignment:
| Q |
9 |
atgtcgaagaaaatttattaaaattcatggaattaggaattttcatatacttgggttgcaggagtcttacgtataatcttatttatgcgcagttgaaaat |
108 |
Q |
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| T |
35918043 |
atgtccaataaaaattattaaagttcatggaattaggaattttcatatacttgggttgcaggagtcttacgta----------tatgcgcagttgaaaat |
35917954 |
T |
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| Q |
109 |
tgtctatataattggattgtttga |
132 |
Q |
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| T |
35917953 |
tgtctatataattggattgtttga |
35917930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 35917872 - 35917819
Alignment:
| Q |
130 |
tgaagagaaccacgtatcaaagatttaacaatttggagaacagaatttgtatgt |
183 |
Q |
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| T |
35917872 |
tgaagagaaccgtgtatcaaagatttaacaatttggagaacagaatttgtatgt |
35917819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 209 - 387
Target Start/End: Original strand, 56391185 - 56391363
Alignment:
| Q |
209 |
tgtcatctcctcaaccaatgcagcagtccagttaggatctgccaaagctttatgtacattactaggaatagaaatcgaggataattgagataaaaaagat |
308 |
Q |
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||||||||||||| ||| ||| | ||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| ||| |
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| T |
56391185 |
tgtcatctcctcagccattgcttcggtccatctaggatctgccaaagcttcctgtacattactaggaatagaaattgaggataattgagatacaaatgat |
56391284 |
T |
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| Q |
309 |
gcatatgaccgagataacttgtgagatgacacataattactaatgggatattttactttggattggaggtatggttcat |
387 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||| |||||||| |
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| T |
56391285 |
gcatatgaccgagataacttgtgagttgacacataattactaatgggatatttagctttggattgagggtctggttcat |
56391363 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 241 - 387
Target Start/End: Original strand, 27515458 - 27515604
Alignment:
| Q |
241 |
taggatctgccaaagctttatgtacattactaggaatagaaatcgaggataattgagataaaaaagatgcatatgaccgagataacttgtgagatgacac |
340 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||| |||||| |
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| T |
27515458 |
taggatctgccaaagcttcctgtacattactaggaatagaaattgaggataattgagatacaaatgatgcatatgaccgagataacttgtgagttgacac |
27515557 |
T |
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| Q |
341 |
ataattactaatgggatattttactttggattggaggtatggttcat |
387 |
Q |
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||||||||||||||||||||| |||| ||||| ||| |||||||| |
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| T |
27515558 |
ataattactaatgggatatttagcttttgattgagggtctggttcat |
27515604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 209 - 387
Target Start/End: Complemental strand, 39744274 - 39744096
Alignment:
| Q |
209 |
tgtcatctcctcaaccaatgcagcagtccagttaggatctgccaaagctttatgtacattactaggaatagaaatcgaggataattgagataaaaaagat |
308 |
Q |
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||||||||||||| ||| ||| | ||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||| ||| |
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| T |
39744274 |
tgtcatctcctcagccattgcttcggtccatctaggatctgccaaagcttcctgtacattactaggaatagaaattgaggataattgagatacaaatgat |
39744175 |
T |
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| Q |
309 |
gcatatgaccgagataacttgtgagatgacacataattactaatgggatattttactttggattggaggtatggttcat |
387 |
Q |
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||||||||| ||||||||||||||| ||||||||||||||||||| | ||||| |||||||||| ||| |||||||| |
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| T |
39744174 |
gcatatgactgagataacttgtgagttgacacataattactaatgaggtatttagctttggattgagggtctggttcat |
39744096 |
T |
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