View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1435_low_36 (Length: 402)
Name: NF1435_low_36
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_36 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 45693994 - 45693626
Alignment:
| Q |
18 |
gcataatcatcacgatgaaaaaatttaggggaagaaattactcacctttttctgaagttctgaaatagattcatacataacttggttctgcgtgagaatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45693994 |
gcataatcatcacgatgaaaaaatttaggggaagaaattactcacctttttctgaagttctgaaatagattcatacataacttggttctgcgtgagaatc |
45693895 |
T |
|
| Q |
118 |
caaattaagtgaggataattcaattaaaacgtcaaactaaatcaccaaaagtattctgaatgtagcatagtttaactttaccttccgtgatctaatttgt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45693894 |
gaaattaagtgaggataattcaattaaaacgtcaaactacatcaccaaaagtattctcaatgtagcatagtttaactttaccttccgtgatctaatttgt |
45693795 |
T |
|
| Q |
218 |
ttgagagctgaatcaagttgttgttccaaactttgaagctctttgagacctaaaccatccaagtcttctcccataaaattcctgaaacaaagcagttgcc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45693794 |
ttgagagctgaatcaagttgttgttccaaactttgaagctctttgagacctaaaccatccaagtcttctcccataaaattcctgaaacaaagcagttgcc |
45693695 |
T |
|
| Q |
318 |
attgcatatgaattttattacacaagaaaacaaagttatcttgcttgtaaaaatattaattagtacctttg |
388 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45693694 |
attgcatatgaa--ttattacacaagaaaacaaagttatcttgcttgtaaaaatattaattagtacctttg |
45693626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 300
Target Start/End: Complemental strand, 25541411 - 25541306
Alignment:
| Q |
195 |
ttaccttccgtgatctaatttgtttgagagctgaatcaagttgttgttccaaactttgaagctctttgagacctaaaccatccaagtcttctcccataaa |
294 |
Q |
| |
|
||||||||| ||||||||| ||||||||||| ||||||||||| || |||||| ||||||||||| | || || ||||| | ||||| |||||||| |
|
|
| T |
25541411 |
ttaccttccttgatctaatctgtttgagagcagaatcaagttgatgctccaaatgctgaagctctttcatacttaggccatcaagttcttcacccataaa |
25541312 |
T |
|
| Q |
295 |
attcct |
300 |
Q |
| |
|
|||||| |
|
|
| T |
25541311 |
attcct |
25541306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University