View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_38 (Length: 401)
Name: NF1435_low_38
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 13 - 386
Target Start/End: Complemental strand, 10558190 - 10557817
Alignment:
| Q |
13 |
attattctcagagaaatctagcttattaatattttttagcctacccacttcaacagataggtttccactcaatgagttttgtgacaagtccagtgagttt |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10558190 |
attattctcagagaaatctagcttattaatattttttagcctacccacttcaacagataggtttccactcaatgagttttgtgacaagtccagtgagttt |
10558091 |
T |
|
| Q |
113 |
gataatgaggaaatactaaaaacctccaagggtatggttcctctaaaattattttttgaaaggtttaggtgatgtaaattgtgacaatttccgaagcttg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10558090 |
gataatgaggaaatactaaaaacctccaagggtatggttcctctaaaattattttttgaaaggtttaggtgatgtaaattgtgacaatttccgaagcttg |
10557991 |
T |
|
| Q |
213 |
ggggaatatttcctcctaacatattatgtgctagactcaaataatacatctgactaaaattacctatgaagcctggaatgtgtcctgacaattggtttcc |
312 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10557990 |
ggggaatatttcctcctaacatattatgtgctagactcaaataatacatctgactaaaattacctatgaagcctggaatgtgtcctgacaattggtttcc |
10557891 |
T |
|
| Q |
313 |
actcaaatctaacacttgaatcttttgaaacttccaaaaagaatctggaatggtcccttcaaaacggttgtttt |
386 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10557890 |
actcaaatctaacacttgaatcttttgaaacttccaaaaagaatctggaatggtcccttcaaaacggttgtttt |
10557817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 7192272 - 7192034
Alignment:
| Q |
16 |
attctcagagaaatctagcttattaatattttttagcctacccacttcaacagataggtttccactcaatgagttttgtgacaagtccagtgagtttgat |
115 |
Q |
| |
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|||||| |||| ||||||||| || ||| |||||||| |||||||||| | |||| | ||||||||||||||| |||||||| |||| |||||||| |
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| T |
7192272 |
attctccgagacatctagcttgttgatactttttagcatacccacttctcttggtaggctaccactcaatgagtttcttgacaagttcagtaagtttgat |
7192173 |
T |
|
| Q |
116 |
aatgaggaaatactaaaaacctccaagggtatggttcctctaaaattattttttgaaaggtttaggtgatgtaaattgtgacaatttccgaagcttgggg |
215 |
Q |
| |
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|| || |||| ||| ||||| || ||||||||||||||||||| ||| |||| || ||||| |||| ||||| || | || ||||| | |||| | |
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| T |
7192172 |
aacgaagaaagactgaaaacttctaagggtatggttcctctaagattgttttgtgcaaggtccaggtattgtaactttttgcagtttcctatacttgacg |
7192073 |
T |
|
| Q |
216 |
gaatatttcctcctaacatattatgtgctagactcaaat |
254 |
Q |
| |
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||||||||||| |||||||||||| | ||| |||||||| |
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| T |
7192072 |
gaatatttccttctaacatattatctcctacactcaaat |
7192034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 239
Target Start/End: Original strand, 10661034 - 10661250
Alignment:
| Q |
23 |
gagaaatctagcttattaatattttttagcctacccacttcaacagataggtttccactcaatgagttttgtgacaagtccagtgagtttgataatgagg |
122 |
Q |
| |
|
|||| ||||||||| || ||| || |||| |||||||||| | | |||| | |||||||||||||||| |||||||| |||| |||||| ||| |||| |
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| T |
10661034 |
gagacatctagcttgttgatacttattagtttacccacttctattggtaggctaccactcaatgagttttttgacaagttcagtaagtttgttaaagagg |
10661133 |
T |
|
| Q |
123 |
aaatactaaaaacctccaagggtatggttcctctaaaattattttttgaaaggtttaggtgatgtaaattgtgacaatttccgaagcttgggggaatatt |
222 |
Q |
| |
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||| |||||| |||| ||||||||||||||||| | | |||| |||||||| |||| |||| || || |||| ||| | ||||| |||||||| |
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| T |
10661134 |
aaagactaaagacctttttgggtatggttcctctaagaatgttttgtgaaaggtctagggattgtagcttttggcaatgtcctatgcttgaaggaatatt |
10661233 |
T |
|
| Q |
223 |
tcctcctaacatattat |
239 |
Q |
| |
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||||||||||||||||| |
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|
| T |
10661234 |
tcctcctaacatattat |
10661250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 167
Target Start/End: Original strand, 19606868 - 19606958
Alignment:
| Q |
77 |
ccactcaatgagttttgtgacaagtccagtgagtttgataatgaggaaatactaaaaacctccaagggtatggttcctctaaaattatttt |
167 |
Q |
| |
|
||||| |||||||||| |||||| |||||| | ||||||| ||||||| || ||||||||| |||||||||||||| |||| |||||||| |
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|
| T |
19606868 |
ccactgaatgagttttttgacaaatccagtaatattgataaagaggaaagacgaaaaacctctaagggtatggttccactaagattatttt |
19606958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 9837274 - 9837358
Alignment:
| Q |
20 |
tcagagaaatctagcttattaatattttttagcctacccacttcaacagataggtttccactcaatgagttttgtgacaagtcca |
104 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||| |||||||||| ||| || | ||||||||||| |||||||| ||||||| |
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| T |
9837274 |
tcagagacatctagcttatgaatattttttagcaaacccacttcatcaggtaaactaccactcaatgaattttgtgataagtcca |
9837358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 77 - 245
Target Start/End: Complemental strand, 10564233 - 10564065
Alignment:
| Q |
77 |
ccactcaatgagttttgtgacaagtccagtgagtttgataatgaggaaatactaaaaacctccaagggtatggttcctctaaaattattttttgaaaggt |
176 |
Q |
| |
|
|||||||| ||||| |||||||||| || | |||||| ||| || |||| |||||||||||| | ||||||| ||| |||| ||||| | ||||| | |
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|
| T |
10564233 |
ccactcaaagagttatgtgacaagttcaataagtttgttaaagaagaaagactaaaaacctctagaggtatggatccattaaatttattataagaaagat |
10564134 |
T |
|
| Q |
177 |
ttaggtgatgtaaattgtgacaatttccgaagcttgggggaatatttcctcctaacatattatgtgcta |
245 |
Q |
| |
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||| |||||||| ||||||||||| | ||| || |||||||||||| | ||||||||||| |||| |
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| T |
10564133 |
ctagtacttgtaaattttgacaatttcctatgctaggaggaatatttccttcaaacatattatgagcta |
10564065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 10610977 - 10610767
Alignment:
| Q |
16 |
attctcagagaaatctagcttattaatattttttagcctacccacttcaacagataggtttccactcaatgagttttgtgacaagtccagtgagtttgat |
115 |
Q |
| |
|
||||||||| | ||||||| ||||||||||||||||| |||||||||| | || | | |||||||| ||||| || ||||||| || | | |||||| |
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|
| T |
10610977 |
attctcagatacatctagcatattaatattttttagcatacccacttctcttggtaagctaccactcaaagagttatgcgacaagttcaataaatttgat |
10610878 |
T |
|
| Q |
116 |
aatgaggaaatactaaaaacctccaagggtatggttcctctaaaattattttttgaaaggtttaggtgatgtaaattgtgacaatttccgaagcttgggg |
215 |
Q |
| |
|
|| | ||| | |||||| ||| || ||||||| ||| |||| ||||| | ||||| | ||||| ||||| || ||||||||||| | |||||| | |
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|
| T |
10610877 |
aaataaaaaagattaaaaatctctaaaggtatggatccactaagtttattatgagaaagatctaggtattgtaacttttgacaatttcctatgcttggag |
10610778 |
T |
|
| Q |
216 |
gaatatttcct |
226 |
Q |
| |
|
||||||||||| |
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|
| T |
10610777 |
gaatatttcct |
10610767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 138
Target Start/End: Original strand, 10741641 - 10741763
Alignment:
| Q |
16 |
attctcagagaaatctagcttattaatattttttagcctacccacttcaacagataggtttccactcaatgagttttgtgacaagtccagtgagtttgat |
115 |
Q |
| |
|
||||||||| | ||||||| | | ||||||||||| | |||||||||| | || | | |||||||| | ||| ||||||||||||| | |||||||| |
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|
| T |
10741641 |
attctcagatagatctagcatgtcaatattttttaacatacccacttctcttggtatgctaccactcaaagtgttatgtgacaagtccaataagtttgat |
10741740 |
T |
|
| Q |
116 |
aatgaggaaatactaaaaacctc |
138 |
Q |
| |
|
|| || |||| |||||||||||| |
|
|
| T |
10741741 |
aaagaagaaagactaaaaacctc |
10741763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 127 - 386
Target Start/End: Original strand, 31468215 - 31468474
Alignment:
| Q |
127 |
actaaaaacctccaagggtatggttcctctaaaattattttttgaaaggtttaggtgatgtaaattgtgacaatttccgaagcttgggggaatatttcct |
226 |
Q |
| |
|
|||||||||||| | |||||||||||||||| ||| |||| ||||||| || ||||| ||| || || || ||||| | |||| | |||||||||||| |
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|
| T |
31468215 |
actaaaaacctctatcggtatggttcctctaagattgttttgcgaaaggtctaagtgatataacttttggcagtttcctatgcttagaggaatatttcct |
31468314 |
T |
|
| Q |
227 |
cctaacatattatgtgctagactcaaataatacatctgactaaaattacctatgaagcctggaatgtgtcctgacaattggtttccactcaaatctaaca |
326 |
Q |
| |
|
|||| || |||| | |||||| |||||| ||| |||||| | || ||||| || |||| || | ||| || || ||||||||||||| ||||||| |
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|
| T |
31468315 |
tctaatatgttatctcctagacctaaataaaacaactgactgaggtttcctataaaagctggtatatttccagataaccggtttccactcaattctaaca |
31468414 |
T |
|
| Q |
327 |
cttgaatcttttgaaacttccaaaaagaatctggaatggtcccttcaaaacggttgtttt |
386 |
Q |
| |
|
|||| | |||||||||||| | |||| ||||||||| |||||||||||||||| |||| |
|
|
| T |
31468415 |
cttgcaacttttgaaactttccgaaagtatctggaataatcccttcaaaacggttatttt |
31468474 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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