View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_39 (Length: 398)
Name: NF1435_low_39
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_39 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 398
Target Start/End: Original strand, 980658 - 981042
Alignment:
| Q |
16 |
tatttcctaggtgccaaggaaaagccaatgtgcagggttgtttgtgaaaacaataacgaatatgtttttaatttacaaagtgtaagtcaaatatatacaa |
115 |
Q |
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| T |
980658 |
tattttctaggtgccagggaaaagccaatgtgcagggttgtttgtgaaaacaacaactaatatgtttttaatttacaatgtgtaagttaaatatatacaa |
980757 |
T |
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| Q |
116 |
tatgtaatatcaaacttcagaggtacctacaattgggtaaaaaag--ctatacaaacttacaaccatgttttctgcatatttagttgaataggttctgtc |
213 |
Q |
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| T |
980758 |
tatgtaatatcaaacttcagaggtacctacaactgggtaaaaaaaatctatacaaacttacaaccatgttttctgcatatttagttgaataggttccgtc |
980857 |
T |
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| Q |
214 |
tttccttaaccaagttgtcactataacctcagctcgacaaatgggtcttctcaaatctgtctcctatcacattatgttaaagcaaagaaaaagttatagt |
313 |
Q |
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|||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
980858 |
tttcttcaaccaagttgtcactataacctcagctcgacaaatgggtcttctcaattctgtctcctatcatattatgttaaagcaaagaaaaagttagagt |
980957 |
T |
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| Q |
314 |
atggtaggtaacctgaaactaaatttgcaaaaatacaaccaaaatatgattct-cacattagaacaaaccatttcgtacgccctcc |
398 |
Q |
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| T |
980958 |
atgataggtaacctgaaactaaatttgcaaaaatactaccaaaatatgattttacacattggaac-aaccatttcgtatgccctcc |
981042 |
T |
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