View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_4 (Length: 612)
Name: NF1435_low_4
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 606
Target Start/End: Original strand, 39756599 - 39757216
Alignment:
| Q |
1 |
aaatgctaatgtcgttaaagaaaggtattattttcttctatatactttagtagttggaaagataaattaaaaaattattgtgatcagtataacgtaatta |
100 |
Q |
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| T |
39756599 |
aaatgccaatttcgttaaagaaaggtattatttgctactatatagtttagtagttggaaagataaactaaaaaataattgtgatcagtataacctaatta |
39756698 |
T |
|
| Q |
101 |
ttttcaactatcattgcaaggatcatcaaatgggtcactcaaaaaggattggaagatgacaagggaaattcaaaaagcaccattcaacttgtcattcttg |
200 |
Q |
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| T |
39756699 |
ttttcaactttcatttcaaggatcatcaaatgggtcactcaaaaaggattggaagatgacaagggaaattcaaaaagcaccattcaacttgtcattcttg |
39756798 |
T |
|
| Q |
201 |
acacttcgagtaagatttttataatttctatacttactctttcttaaaatctcgcagttattttcttgtctgattgatcaatacatgtacgatattgtta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||| |
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| T |
39756799 |
acacttcgagtaagatttttataatttctatacttactctttcttaaaatctcgcagttattttcttgtctgattgatcaatgcatggatgatattgtta |
39756898 |
T |
|
| Q |
301 |
tagatttggtgaacattgacacctctggaattgcttctatggaggaactgtacaagtgtttgtctacacatggaaagcaggtaacttcattttcttttta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39756899 |
tagatttggtgaacattgacacctctggaattgcttctatggaggaactgtacaagtgtttgtctacacatggaaagcaggtaacttcattttcttttta |
39756998 |
T |
|
| Q |
401 |
gg------tgtaaatataaataaaagggtgtttctataaatgttttattggatggtaagcacactgatcttcatacctttttggttatgatcgataactg |
494 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39756999 |
ggtgtatatgtaaatataaataaaagggtgtttctataaatgttttattggatggtaagcacactgatcttcatacctttttggttatgatcgataactg |
39757098 |
T |
|
| Q |
495 |
t------aaaaaccgcttaaatgataataatgaaaaatcattcattttcatacatgt-aatgtaaaaatacatatcttatgatccataatttggacctct |
587 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||| || || | || | |||||||||||||||||||||||||||| |
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| T |
39757099 |
taaccacaaaaaccgcttaaatgataataatgaaaaatcattcattttcatacatgtaaaaatacatat-cttatcttatgatccataatttggacctct |
39757197 |
T |
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| Q |
588 |
aattaactgccctttgatt |
606 |
Q |
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||||||||||| ||||||| |
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| T |
39757198 |
aattaactgccttttgatt |
39757216 |
T |
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