View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_40 (Length: 397)
Name: NF1435_low_40
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 8 - 376
Target Start/End: Complemental strand, 6271019 - 6270651
Alignment:
| Q |
8 |
catcatcaaaaatggaaactaagaaccaatcaacaagacaacaaaacaattaatgattaactttaaagatagcatgtttgaataattcaccaccctaaat |
107 |
Q |
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| T |
6271019 |
catcatcaaaaatggaaactaagaaccaatcaacaagacaacaaaacaattaatgatttactttaaagatagcatatttgaataattcaccaccctaaat |
6270920 |
T |
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| Q |
108 |
agtaaaaactagattatcaaatgtaacaatgaatagattatcacttacttctcacttgttcatctctacaaatctctctggcaagagtagttttcccaga |
207 |
Q |
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| T |
6270919 |
aataaaaactagattatcaaatgtaacaatgaatagattatcacttacctctcacttgttcatctctacaaatctctctggcaagagtagttttcccaga |
6270820 |
T |
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| Q |
208 |
tccaccaatcccagaaattccaacaagacaaaaatctttccttccaacaaccatttccataaccttattcttcccaaactccaaaccaaaactcaaatcc |
307 |
Q |
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| T |
6270819 |
tccaccaatcccagaaattccaacaagacaaaaatctttccttccaacaaccatttccataaccttattcttcccaaactccaaaccaaaactcaaatcc |
6270720 |
T |
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| Q |
308 |
aaattccccaaactaccctcatcttcctcactagacctcacagcttcctcaacccacccaacaccacca |
376 |
Q |
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| T |
6270719 |
aaattccccaaactaccctcatcttcctcactagacctcacagctccctcaacccacccaacaccacca |
6270651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 138 - 328
Target Start/End: Complemental strand, 6261877 - 6261687
Alignment:
| Q |
138 |
gaatagattatcacttacttctcacttgttcatctctacaaatctctctggcaagagtagttttcccagatccaccaatcccagaaattccaacaagaca |
237 |
Q |
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| T |
6261877 |
gaatagatcatcacttacatctcacttgttcatctttacaaatctctttaacaagagttgttttcccagatccaccaatcccatgaataccaacaaccca |
6261778 |
T |
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| Q |
238 |
aaaatctttccttccaacaaccatttccataaccttattcttcccaaactccaaaccaaaactcaaatccaaattccccaaactaccctca |
328 |
Q |
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| T |
6261777 |
taaatcctctcttcccataaccatctccttaactttcttcttccccaaatccaaaccaacactcaaactcaaattcccataattaccctca |
6261687 |
T |
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