View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1435_low_41 (Length: 397)

Name: NF1435_low_41
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1435_low_41
NF1435_low_41
[»] chr2 (8 HSPs)
chr2 (14-381)||(35890350-35890717)
chr2 (217-363)||(34989848-34989995)
chr2 (133-186)||(34989793-34989846)
chr2 (150-203)||(35887687-35887740)
chr2 (219-375)||(35528261-35528418)
chr2 (247-288)||(35892221-35892262)
chr2 (114-186)||(35919015-35919092)
chr2 (302-375)||(35564642-35564715)
[»] chr1 (2 HSPs)
chr1 (257-373)||(21445263-21445379)
chr1 (14-90)||(21445141-21445217)
[»] chr3 (2 HSPs)
chr3 (257-381)||(29623760-29623884)
chr3 (194-226)||(42189733-42189765)


Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 14 - 381
Target Start/End: Original strand, 35890350 - 35890717
Alignment:
Q  14 ttctattaacataacactaaggaagagaaaatcagaaggaccttctgatactacaatttcttccaagaaaagaaatggaaaccctcctggcttgcatacc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35890350 ttctattaacataacactaaggaagagaaaatcagaaggaccttctgatactacaatttcttccaagaaaagaaatggaaaccctcctggcttgcatacc 35890449  T
Q  114 atgaatttgaatgctggtcaggtgcataacattattcaatcttcacatttcatatgcaattttatatttcattaatgtactgttactatagaacgaggaa 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35890450 atgaatttgaatgctggtcaggtgcataacattattcaatcttcacatttcatatgcaattttatatttcattaatgtactgttactatagaacgaggaa 35890549  T
Q  214 ataattaaatataatatggttttgaaaatattaattattttgtaggatgtagtggatgctatataccaactatctgcgacatatgatcatcgtcaatttg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35890550 ataattaaatataatatggttttgaaaatattaattattttgtaggatgtagtggatgctatataccaactatctgcgacatatgatcatcgtcaatttg 35890649  T
Q  314 ttaggataatttctgcgaccggttctgtatcaggcattgtcttttgtgatcaatatggttcttacaag 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35890650 ttaggataatttctgcgaccggttctgtatcaggcattgtcttttgtgatcaatatggttcttacaag 35890717  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 217 - 363
Target Start/End: Original strand, 34989848 - 34989995
Alignment:
Q  217 attaaatataatatggttttgaaaata-ttaattattttgtaggatgtagtggatgctatataccaactatctgcgacatatgatcatcgtcaatttgtt 315  Q
    ||||||||| ||||||||||| || || |||||||||||| ||||| | ||||||||| |||| |||||||||| | |||||||||||||||    ||||    
T  34989848 attaaatattatatggttttgcaattaattaattattttgcaggatttggtggatgctgtatatcaactatctgaggcatatgatcatcgtcgtcatgtt 34989947  T
Q  316 aggataatttctgcgaccggttctgtatcaggcattgtcttttgtgat 363  Q
    || ||| ||| |||||| |||| |||||||   ||||||||| |||||    
T  34989948 agcatagtttttgcgactggttttgtatcaatgattgtctttcgtgat 34989995  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 34989793 - 34989846
Alignment:
Q  133 aggtgcataacattattcaatcttcacatttcatatgcaattttatatttcatt 186  Q
    |||||||||||| | |||||||||||| ||||||||||||||||||||||||||    
T  34989793 aggtgcataacactgttcaatcttcacttttcatatgcaattttatatttcatt 34989846  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 203
Target Start/End: Original strand, 35887687 - 35887740
Alignment:
Q  150 caatcttcacatttcatatgcaattttatatttcattaatgtactgttactata 203  Q
    |||||||||||||||| |||||| |||||||||||| |||||||||||||||||    
T  35887687 caatcttcacatttcagatgcaactttatatttcatcaatgtactgttactata 35887740  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 219 - 375
Target Start/End: Complemental strand, 35528418 - 35528261
Alignment:
Q  219 taaatataatatggttttgaaaatattaatt-attttgtaggatgtagtggatgctatataccaactatctgcgacatatgatcatcgtcaatttgttag 317  Q
    ||||||| ||||| ||||||||||| ||| | |||||||||||||| ||||||||| |||||| |||||||| | ||| | |||||| ||   |||||||    
T  35528418 taaatattatatgcttttgaaaataataaatgattttgtaggatgtggtggatgctctataccgactatctgaggcatttcatcatcatcgccttgttag 35528319  T
Q  318 gataatttctgcgaccggttctgtatcaggcattgtcttttgtgatcaatatggttct 375  Q
     |||  ||||| | | |||| |||||||| | || |||||  ||||||| ||||||||    
T  35528318 tatagattctgtgtctggttatgtatcagacgttctctttcatgatcaagatggttct 35528261  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 35892221 - 35892262
Alignment:
Q  247 attattttgtaggatgtagtggatgctatataccaactatct 288  Q
    ||||||||| ||||||||||||||||| ||||||||||||||    
T  35892221 attattttgcaggatgtagtggatgctttataccaactatct 35892262  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 186
Target Start/End: Original strand, 35919015 - 35919092
Alignment:
Q  114 atgaatttgaatgctggtcaggt-gcataacattatt----caatcttcacatttcatatgcaattttatatttcatt 186  Q
    ||||||||||||||||||||||| | ||||| ||| |    |||||||| |||| |||||||||||||||||||||||    
T  35919015 atgaatttgaatgctggtcaggtagtataactttaattaaccaatcttcgcattccatatgcaattttatatttcatt 35919092  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 375
Target Start/End: Complemental strand, 35564715 - 35564642
Alignment:
Q  302 atcgtcaatttgttaggataatttctgcgaccggttctgtatcaggcattgtcttttgtgatcaatatggttct 375  Q
    |||||||| ||||||| ||  ||||||| |||||||||||||||| | || ||||| |||||||  ||||||||    
T  35564715 atcgtcaacttgttagcatggtttctgcaaccggttctgtatcagactttctctttcgtgatcatgatggttct 35564642  T

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Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 257 - 373
Target Start/End: Original strand, 21445263 - 21445379
Alignment:
Q  257 aggatgtagtggatgctatataccaactatctgcgacatatgatcatcgtcaatttgttaggataatttctgcgaccggttctgtatcaggcattgtctt 356  Q
    ||||||| ||||| ||||||||||||||||||  ||||||||||||||||| || | | || ||||||||||||||||||| | |||||| |||||||||    
T  21445263 aggatgttgtggacgctatataccaactatctaagacatatgatcatcgtcgatatctaagcataatttctgcgaccggttttatatcagacattgtctt 21445362  T
Q  357 ttgtgatcaatatggtt 373  Q
    | |||||||||||||||    
T  21445363 tcgtgatcaatatggtt 21445379  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 14 - 90
Target Start/End: Original strand, 21445141 - 21445217
Alignment:
Q  14 ttctattaacataacactaaggaagagaaaatcagaaggaccttctgatactacaatttcttccaagaaaagaaatg 90  Q
    |||||| |||||||| | |||||||||||||| |||||||||||||||  ||  || |||||| |||||||||||||    
T  21445141 ttctataaacataacgccaaggaagagaaaattagaaggaccttctgaagctgaaacttcttcgaagaaaagaaatg 21445217  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 257 - 381
Target Start/End: Original strand, 29623760 - 29623884
Alignment:
Q  257 aggatgtagtggatgctatataccaactatctgcgacatatgatcatcgtcaatttgttaggataatttctgcgaccggttctgtatcaggcattgtctt 356  Q
    |||||||  |||| ||| ||||| ||||||||| | |||||||||||| || ||||||||| |||||||||||||| ||||||| |||||   ||||| |    
T  29623760 aggatgttttggacgctttatacaaactatctgaggcatatgatcatcatcgatttgttagtataatttctgcgactggttctgcatcagatgttgtcat 29623859  T
Q  357 ttgtgatcaatatggttcttacaag 381  Q
      |||||||||||||||||||||||    
T  29623860 ccgtgatcaatatggttcttacaag 29623884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 42189733 - 42189765
Alignment:
Q  194 tgttactatagaacgaggaaataattaaatata 226  Q
    |||||||||||||||||||||||||||||||||    
T  42189733 tgttactatagaacgaggaaataattaaatata 42189765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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