View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_43 (Length: 393)
Name: NF1435_low_43
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 378
Target Start/End: Original strand, 39075620 - 39075980
Alignment:
| Q |
11 |
cacagaactgcatagtgaatcaaaaggaacttggaacttgaaagacatgaaaaaaggaaactaacatatatttctgctataggggacaaaaataattgag |
110 |
Q |
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| T |
39075620 |
cacagaactgcatagtgaatcaaaaggaacttggaa-------gacatgaaaaaaggaaactaacatatatttctgctataggggacaaaaataattgag |
39075712 |
T |
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| Q |
111 |
taaatcaaaactgccctagatggattatgtttgtcttgaaatggtttagcaagaacatgaatgaaatatctgttgttactttatattggacctataaact |
210 |
Q |
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| T |
39075713 |
taaatcaaaactgccctagatggattatgtttgtcttgaagtggtttagcaagaatatgaatgaaatatctattgttactttatattggacctataaact |
39075812 |
T |
|
| Q |
211 |
atgctttttctaccctgcaaatatacaataagaatcaaaacaaaatccagcacaaagccatgtattaattgagcaaagtatatcacgaaataatacatga |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39075813 |
atgctttttctaccctgcaaatatacaataagaatcaaaacaaaatccagcacaaagccatgtattaattgagtaaagtatatcacgaaataatacatga |
39075912 |
T |
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| Q |
311 |
taataattaaatatatctagcagcattggttcgaaggaagtagtgaacccacttccaattgcttaaaa |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39075913 |
taataattaaatatatctagcagcattggttcgaaggaagtagtgaacccacttccaattgcttaaaa |
39075980 |
T |
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