View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_44 (Length: 388)
Name: NF1435_low_44
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_44 |
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Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 1216534 - 1216164
Alignment:
| Q |
1 |
tcacaaaagttttagcttccttgcagtcagacatttcaggagcagagccaagacgcatacaagcctcgtagacttggaacgcaagccattggtcatgaag |
100 |
Q |
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| T |
1216534 |
tcacaaaagttttagcttccttgcagtcagacatttcaggagcagagccaagacgcatacaagcctcgtagacttggaacgcaagccattggtcatgaag |
1216435 |
T |
|
| Q |
101 |
agtactgaaatgaatgcatacgtacataagtacatgtttatataagcatatgcttctttaagaacgcataacatattagtatttttgtactaccttaaat |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1216434 |
agtactgaaatgaatgcatacgtacgtaagtacatgtttatataagcatatgcttctttaagaacgcataacatattagtatttttgtactaccttaaac |
1216335 |
T |
|
| Q |
201 |
gaaatattagaaggcgaggtttcttgttgaacactccctcctcaaattgtactttgcgttttaaatcttttggatctacttccatatctgaagcgacaaa |
300 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1216334 |
gaaatgttagaaggcgaggtttcttgttgaacactccctcctcaaattgtactctgcgttttaaatcttttggatctacttccatatctgaagcgacaaa |
1216235 |
T |
|
| Q |
301 |
acaaaacattaggttttcttgttgaaccctccctccctcctcaaagtttggtttataaccaaaactgaatg |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1216234 |
acaaaacattaggttttcttgttgaaccctccctccctcctcaaagtttggtttataaccaaaactgaatg |
1216164 |
T |
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