View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_45 (Length: 386)
Name: NF1435_low_45
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 11 - 369
Target Start/End: Complemental strand, 40377902 - 40377544
Alignment:
| Q |
11 |
attcattaacttttgtgcattgaaagaatgcgacctctcggttcatataccaaattatattttgggatatcggtgtacatacgcggagtattgaagacca |
110 |
Q |
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| T |
40377902 |
attcattcacttttgtgcattgaaagaatgcgacctctcggttcatataccaaattatattttgggatatcggtgtacatacgcggagtattgaagacca |
40377803 |
T |
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| Q |
111 |
tatacnnnnnnnnaaggcaaatttattgataaagatcaaattatctttctgatcgattaaaaacccaataaagtaaggtcaattacgccaaaatccaaga |
210 |
Q |
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| T |
40377802 |
tatacttttttttaaggcaaatttattaataaagatcaaattatctttctgatcgactaaaaacccaataaagtaaggttaattacgccaaaatccaaga |
40377703 |
T |
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| Q |
211 |
caaacaaggcaaaacaaaatgaaggagcaccacacaaaagtacatcctgactccatctccacgtccaagtctgcctcttaagatcgtgtcgcacttcgca |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||| |
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| T |
40377702 |
caaacaaggcaaaacaaaatgaaggagcaccacacaaaagtacatcctgactccatctccacgtccatgtctgcctcttaatatcgtgtcacacttcgca |
40377603 |
T |
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| Q |
311 |
aggaccattagcgctctcaacgtctgtagaagggtgattcaacatcgccctcaaattat |
369 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40377602 |
aggaccattagcgctctcaacgtctgtataagggtgattcaacatcgccctcaaattat |
40377544 |
T |
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