View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_46 (Length: 384)
Name: NF1435_low_46
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_46 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 3357207 - 3357590
Alignment:
| Q |
1 |
ccacaaaagctgactgttgttattactattgttgtaatgaaagtcattaccaacattcttggtcaaactgtaataagcgctacgaacagtgtaacgatga |
100 |
Q |
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| T |
3357207 |
ccacaaaagctgcttgttgttattactatcgttataatgaaagtcattaccaacattcttggtcaaactgtaataagcgctacgaacagtgtaacgatga |
3357306 |
T |
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| Q |
101 |
aaagaatgaagctttcaaacccactaaccctccacatcaacctgcaagacactagaagttaacaactcaatacactcccccactaactcctcttcccaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3357307 |
aaagaatgaagctttcaaacccactaaccctccacatcaacctgcaagacactagaagttaacaactcaatacactccctcactaactcctcttcccaat |
3357406 |
T |
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| Q |
201 |
caaagagcttatgtcgtcacttccacgcctctctattcactccatataatcttcattttgttctcagctaactcatataatctatcgaaccgaacaaaaa |
300 |
Q |
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| T |
3357407 |
caaagagcttatgccgtcacttccacgcctctccattgactccatataatcttcattttgttcttagctaactcatataatctatcgaaccgaacaaaaa |
3357506 |
T |
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| Q |
301 |
aggtacaccatccaacccatggtccctccaaaatagagtgctctcaaccaatattataactaaccaaccaacattcgccaaaca |
384 |
Q |
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| T |
3357507 |
aggtacaccatccaacccatggtccctccaaaatagagtgctctcaaccaatattataactaatcaaccaacattcgccaaaca |
3357590 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 14956625 - 14956565
Alignment:
| Q |
253 |
tcattttgttctcagctaactcatataatctatcgaaccgaacaa-aaaaggtacaccatc |
312 |
Q |
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| T |
14956625 |
tcattttgttctcagttaactcatataatctacataacctaacaataaaaggtacaccatc |
14956565 |
T |
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