View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_48 (Length: 375)
Name: NF1435_low_48
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 37 - 230
Target Start/End: Original strand, 7471877 - 7472070
Alignment:
| Q |
37 |
aggagcttcttcagagagtaatcgcaacaaaatgaaattgtatgtaacaaaactctgttactcttgattttatgtaaaagaagaaaatgcaatggataag |
136 |
Q |
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| T |
7471877 |
aggagcttctttagagagtaatcgcaacaaaatgaaattgtatgtaacaaaactctgttactcttgattttatgtaaaagaagaaaatgcagtggataag |
7471976 |
T |
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| Q |
137 |
agaagtttattcctggttattagttgaatagaggtcattacttcaacacctggctcggtcaagattaaaagttcctctcattagtaggaaggac |
230 |
Q |
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| T |
7471977 |
agaagtttattcctcgttattggttgaatagaggtcattacttcaacacctggctcggtcaagattaaaagttcctctcattagtaggaaggac |
7472070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 291 - 359
Target Start/End: Original strand, 7472131 - 7472199
Alignment:
| Q |
291 |
gtactatatcctcactatcatgctttgttgatggcaaataatgaaaatgaaaacagaagcgaatgcatg |
359 |
Q |
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| T |
7472131 |
gtactatatcctcactatcatgctttgttgatggcaaataatgaaaatgaaaacagaagcgaatgcatg |
7472199 |
T |
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