View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_54 (Length: 355)
Name: NF1435_low_54
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_54 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 178 - 341
Target Start/End: Original strand, 25409924 - 25410087
Alignment:
| Q |
178 |
atatagtatattatagcaatacaaaaggaacttatttacatgtagcaacgataaaaggatgtttttcaaggtcttacgtaattcagaagtcaacaaattt |
277 |
Q |
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| T |
25409924 |
atatagtatattatagcaatacaaaaggaacttatttacatgtagcaacgataaaaggatgtttttcaaggtcttacgtaattcagaagtctacaaattt |
25410023 |
T |
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| Q |
278 |
gtagtagtttatggaagaatcgtgagaaagcacattttatgtgtagcttttaagagcaaaatgt |
341 |
Q |
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| T |
25410024 |
gtagtagtttatggaagaatcgtgagaaagcacattttatgtgtagcttttaagagcaaaatgt |
25410087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 37 - 98
Target Start/End: Original strand, 25409778 - 25409839
Alignment:
| Q |
37 |
gacaaaacaaagcttccaaaagtaaaatgccaacgtaaatatgtaataccattcaataattt |
98 |
Q |
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| T |
25409778 |
gacaaaacaaagcttccaaaagtaaaatgccaacgtaaatatgtaataccattcaataattt |
25409839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 84 - 134
Target Start/End: Original strand, 25409856 - 25409906
Alignment:
| Q |
84 |
accattcaataattttgattagaggaaacaaccaaataatgcatctttttc |
134 |
Q |
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| T |
25409856 |
accattcaataattttgattagaggaaacaaccaaataatgcatccttttc |
25409906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 25409732 - 25409765
Alignment:
| Q |
5 |
acaccaagagagcaagacgagtgagataatatga |
38 |
Q |
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| T |
25409732 |
acaccaagagagcaagacgagtgagataatatga |
25409765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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