View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_56 (Length: 342)
Name: NF1435_low_56
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_56 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 342
Target Start/End: Original strand, 5257195 - 5257527
Alignment:
| Q |
10 |
atgaaacaaatgagcttcttgagaagctcccttataagcaagagaatatgtacacttatttcctttcctcaaggtgtgtaagaaggacaattaccaattg |
109 |
Q |
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| T |
5257195 |
atgaaccaaatgagattcttgagaagctcccttataagcaagagaatatgtacacttatttcctttcctcaaggtgtgtaagaaggacaattgccaattg |
5257294 |
T |
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| Q |
110 |
taaccaaggaatctataaatagcatctactgttggagcacacatgtgagttggaactactcctatagtaactatatcaactgccattaaggaaccactaa |
209 |
Q |
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| T |
5257295 |
taaccaaggaatctataaatagcatctactgttggagcacacatgtgagttggaactactcctatagtaactatatcaactgccattaaggaaccactaa |
5257394 |
T |
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| Q |
210 |
ataacatacgtgtaacctgttgcccaagttaactatagaaaccatatctacgaatagcatctaccgctgaagcctgccactaattcagcactcatatggg |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| || || || |
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| T |
5257395 |
ataacatacgtgtaacctgttgcccaagttaactatagaaaccatatctacgaatagcatctaccgctgaatatggccaataattcagcattcgtaatgg |
5257494 |
T |
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| Q |
310 |
ctccaacgcaccaaaaaccctcgaaacctacaa |
342 |
Q |
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| T |
5257495 |
cgccaatgccacaaaaaccatagaaacctacaa |
5257527 |
T |
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