View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1435_low_58 (Length: 332)

Name: NF1435_low_58
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1435_low_58
NF1435_low_58
[»] chr1 (3 HSPs)
chr1 (14-316)||(41456853-41457154)
chr1 (163-199)||(26721265-26721301)
chr1 (11-66)||(15174607-15174661)
[»] chr2 (3 HSPs)
chr2 (27-312)||(29895140-29895417)
chr2 (158-199)||(1380714-1380755)
chr2 (151-199)||(37738696-37738744)
[»] chr4 (2 HSPs)
chr4 (158-199)||(10562800-10562841)
chr4 (158-199)||(20396214-20396255)
[»] chr3 (1 HSPs)
chr3 (158-199)||(50544855-50544896)
[»] scaffold0179 (2 HSPs)
scaffold0179 (163-198)||(8165-8200)
scaffold0179 (163-198)||(13099-13134)
[»] chr6 (5 HSPs)
chr6 (161-199)||(17873296-17873334)
chr6 (158-199)||(649540-649581)
chr6 (158-199)||(11060329-11060370)
chr6 (158-199)||(17078657-17078698)
chr6 (158-199)||(18050916-18050957)
[»] scaffold0007 (1 HSPs)
scaffold0007 (158-199)||(182747-182788)
[»] chr8 (1 HSPs)
chr8 (158-198)||(12341200-12341240)
[»] chr5 (1 HSPs)
chr5 (163-199)||(20208192-20208228)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 316
Target Start/End: Complemental strand, 41457154 - 41456853
Alignment:
Q  14 agatatcatatcttctatcgaatctttatttaaatgtttcttttgggggtgggtgtgaggaaattagaaaaattccatggattggaggggatacaatttg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  41457154 agatatcatatcttctatcgaatctttatttaaatgtttcttttgggggtgggtgtgaggaaattaggaaaattccatggattggaggggataca-tttg 41457056  T
Q  114 attagaaaaggagaacggaggttaggggtttagaaaaattaggaaatttaatttggttttgttagaaaagtggtgttggaggatgcacgtggataaagat 213  Q
    ||| |||||||| ||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41457055 attggaaaaggaaaacggaggttagggggttagaaaaattagggaatttaatttggctttgttagaaaagtggtgttggaggatgcacgtggataaagat 41456956  T
Q  214 agtttgtggtttaaggttcttacaacaagatatggtttggagggagaagggtgagagagggtggttgtgtaggatcagtgtagtggaatcggttgcaagt 313  Q
    ||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  41456955 agtttgtggtttaaggttcttgcatcaagatatggtttggtgggagaagggtgagagagggtggttgtgtaagatcagagtagtggaatcggttgcaagt 41456856  T
Q  314 tgt 316  Q
    |||    
T  41456855 tgt 41456853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 26721301 - 26721265
Alignment:
Q  163 aatttggttttgttagaaaagtggtgttggaggatgc 199  Q
    ||||||| |||||||||||||||||||||||||||||    
T  26721301 aatttggctttgttagaaaagtggtgttggaggatgc 26721265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 15174607 - 15174661
Alignment:
Q  11 cacagatatcatatcttctatcgaatctttatttaaatgtttcttttgggggtggg 66  Q
    ||||| ||| || ||||||||||||||||||||||||| ||| |||||||||||||    
T  15174607 cacaggtataatttcttctatcgaatctttatttaaat-ttttttttgggggtggg 15174661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 27 - 312
Target Start/End: Original strand, 29895140 - 29895417
Alignment:
Q  27 tctatcgaatctttatttaaatgtttcttttgggggtgggtgtgaggaaattagaaaaattccatggattggaggggatacaatttgattagaaaaggag 126  Q
    |||||||||||||||||||||| ||||||| |||||||||||||| ||||||        ||| |  ||| || ||| ||||||||  ||| || || ||    
T  29895140 tctatcgaatctttatttaaatctttcttt-gggggtgggtgtgaagaaatt--------tccttatattagacggggtacaattttcttataatagaag 29895230  T
Q  127 aacggaggttaggggtttagaaaaattaggaaatttaatttggttttgttagaaaagtggtgttggaggatgcacgtggataaagatagtttgtggttta 226  Q
    |||  ||||| |||| |||| | ||| | | |||||||||||| ||||||||  |||||||||||||||||| | ||| | || |||||||| |||||||    
T  29895231 aacaaaggtttgggggttagtagaataaaggaatttaatttggctttgttaggtaagtggtgttggaggatgtatgtgtagaaggatagtttatggttta 29895330  T
Q  227 aggttcttacaacaagatatggtttggaggga-gaagggtgagagagggtggttgtgtaggatcagtgtagtggaatcggttgcaag 312  Q
    |||||||| || ||||||||| |||||||||| |||||||| |||||||||||||||||||| ||| || |||||||  ||||||||    
T  29895331 aggttcttgcagcaagatatgatttggagggaggaagggtgtgagagggtggttgtgtaggaacagcgtggtggaattagttgcaag 29895417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 1380755 - 1380714
Alignment:
Q  158 aatttaatttggttttgttagaaaagtggtgttggaggatgc 199  Q
    |||| ||||||| ||| |||||||||||||||||||||||||    
T  1380755 aattcaatttggatttattagaaaagtggtgttggaggatgc 1380714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 37738744 - 37738696
Alignment:
Q  151 attaggaaatttaatttggttttgttagaaaagtggtgttggaggatgc 199  Q
    |||||| | |||||| | |||||||||||||||||||||||| ||||||    
T  37738744 attagggagtttaatatagttttgttagaaaagtggtgttggcggatgc 37738696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 10562800 - 10562841
Alignment:
Q  158 aatttaatttggttttgttagaaaagtggtgttggaggatgc 199  Q
    |||||||||||| |||||||| ||||||||||||||||||||    
T  10562800 aatttaatttggctttgttaggaaagtggtgttggaggatgc 10562841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 20396255 - 20396214
Alignment:
Q  158 aatttaatttggttttgttagaaaagtggtgttggaggatgc 199  Q
    |||||||||||| ||| |||| ||||||||||||||||||||    
T  20396255 aatttaatttggctttattaggaaagtggtgttggaggatgc 20396214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 50544896 - 50544855
Alignment:
Q  158 aatttaatttggttttgttagaaaagtggtgttggaggatgc 199  Q
    |||||||||||| |||||||| ||||||||||||||||||||    
T  50544896 aatttaatttggctttgttaggaaagtggtgttggaggatgc 50544855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 198
Target Start/End: Complemental strand, 8200 - 8165
Alignment:
Q  163 aatttggttttgttagaaaagtggtgttggaggatg 198  Q
    ||||||| ||||||||||||||||||||||||||||    
T  8200 aatttggctttgttagaaaagtggtgttggaggatg 8165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 198
Target Start/End: Complemental strand, 13134 - 13099
Alignment:
Q  163 aatttggttttgttagaaaagtggtgttggaggatg 198  Q
    ||||||| ||||||||||||||||||||||||||||    
T  13134 aatttggctttgttagaaaagtggtgttggaggatg 13099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 17873296 - 17873334
Alignment:
Q  161 ttaatttggttttgttagaaaagtggtgttggaggatgc 199  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  17873296 ttaatttggctttgttaggaaagtggtgttggaggatgc 17873334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 649540 - 649581
Alignment:
Q  158 aatttaatttggttttgttagaaaagtggtgttggaggatgc 199  Q
    |||||||||||| ||| |||| ||||||||||||||||||||    
T  649540 aatttaatttggctttattaggaaagtggtgttggaggatgc 649581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 11060329 - 11060370
Alignment:
Q  158 aatttaatttggttttgttagaaaagtggtgttggaggatgc 199  Q
    |||||||| ||||||||||||  |||||||||||||||||||    
T  11060329 aatttaatgtggttttgttaggtaagtggtgttggaggatgc 11060370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 17078657 - 17078698
Alignment:
Q  158 aatttaatttggttttgttagaaaagtggtgttggaggatgc 199  Q
    |||||||||||| ||| |||| ||||||||||||||||||||    
T  17078657 aatttaatttggctttattaggaaagtggtgttggaggatgc 17078698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Original strand, 18050916 - 18050957
Alignment:
Q  158 aatttaatttggttttgttagaaaagtggtgttggaggatgc 199  Q
    ||||||| |||||||| |||| ||||||||||||||||||||    
T  18050916 aatttaacttggttttattaggaaagtggtgttggaggatgc 18050957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 182788 - 182747
Alignment:
Q  158 aatttaatttggttttgttagaaaagtggtgttggaggatgc 199  Q
    |||||||||||| ||| |||| ||||||||||||||||||||    
T  182788 aatttaatttggctttattaggaaagtggtgttggaggatgc 182747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 12341240 - 12341200
Alignment:
Q  158 aatttaatttggttttgttagaaaagtggtgttggaggatg 198  Q
    |||||||| ||| |||||||| |||||||||||||||||||    
T  12341240 aatttaatatggctttgttaggaaagtggtgttggaggatg 12341200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 20208192 - 20208228
Alignment:
Q  163 aatttggttttgttagaaaagtggtgttggaggatgc 199  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  20208192 aatttggctttgttaggaaagtggtgttggaggatgc 20208228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University