View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1435_low_6 (Length: 588)
Name: NF1435_low_6
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 14 - 337
Target Start/End: Original strand, 46092922 - 46093237
Alignment:
| Q |
14 |
ttctggttacgaatcaatgaaaggagcatataattagtataaacaaaattcagacagttgggccatatagtcgatatatgtagctgttgtatgacgacag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46092922 |
ttctggttacgaatcaatgaaaggagcatataattagtataaacaaaattcagacacttgggccatatagtcgatatatgtagctgttgtatgacgacag |
46093021 |
T |
|
| Q |
114 |
gagcatcattgagaggataagtggattcctttggccacacgcaatcgtgtggttgccacacaacacatcctatatatgcataaaacaaattactactact |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
46093022 |
gagcatcattgagaggataagtggattcctttggccacacgctatcgtgtggttgcc-----acacatcc----tatgcataaaacaaattactactact |
46093112 |
T |
|
| Q |
214 |
tattaagtatatttgacttcatatctttcac-aaaaaagagtatatttgacttaattcatatccaaccaatgtgctacccattattttatgcaatccttg |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46093113 |
tattaagtatatttgacttcatatctttcacaaaaaaagagtatatttgacttaattcatatccaaccaatgtgctacccattattttatgcaatccttg |
46093212 |
T |
|
| Q |
313 |
tcttacgtaaagcaataaaaaatcg |
337 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
46093213 |
tcttacgtaaagcaataaaaaatcg |
46093237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 513 - 572
Target Start/End: Original strand, 46093330 - 46093389
Alignment:
| Q |
513 |
aaccatgcaaaagtgtatttgcactattgccccatcatcgtcgagttatcgcatttgatg |
572 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46093330 |
aaccatgcaaaagtgtatttgcactattgccccatcatcgtcgagttatcgcatttgatg |
46093389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 425
Target Start/End: Original strand, 46093238 - 46093274
Alignment:
| Q |
389 |
aatattgcttaattatcataaaaacttaaatattttg |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46093238 |
aatattgcttaattatcataaaaacttaaatattttg |
46093274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University