View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1435_low_63 (Length: 322)

Name: NF1435_low_63
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1435_low_63
NF1435_low_63
[»] chr3 (2 HSPs)
chr3 (18-312)||(8259581-8259876)
chr3 (187-288)||(10849476-10849577)
[»] chr8 (2 HSPs)
chr8 (21-299)||(15270430-15270705)
chr8 (226-308)||(22619373-22619455)
[»] scaffold0483 (1 HSPs)
scaffold0483 (226-308)||(7878-7960)
[»] chr2 (6 HSPs)
chr2 (225-310)||(27345778-27345863)
chr2 (225-308)||(23928358-23928441)
chr2 (226-308)||(29567008-29567090)
chr2 (226-308)||(19027186-19027268)
chr2 (179-299)||(12092731-12092851)
chr2 (18-63)||(12092573-12092618)
[»] scaffold0034 (1 HSPs)
scaffold0034 (226-308)||(26260-26342)
[»] chr4 (5 HSPs)
chr4 (226-308)||(10270078-10270160)
chr4 (226-301)||(16288022-16288097)
chr4 (225-308)||(18278000-18278083)
chr4 (226-307)||(21335991-21336072)
chr4 (238-307)||(15311649-15311718)
[»] scaffold0008 (1 HSPs)
scaffold0008 (225-308)||(251944-252027)
[»] scaffold0039 (1 HSPs)
scaffold0039 (179-308)||(114082-114208)
[»] chr6 (2 HSPs)
chr6 (226-310)||(18734577-18734661)
chr6 (226-310)||(19861576-19861660)
[»] chr5 (2 HSPs)
chr5 (225-308)||(23491026-23491109)
chr5 (226-310)||(42791091-42791175)
[»] chr1 (2 HSPs)
chr1 (225-308)||(24975326-24975409)
chr1 (181-303)||(23934985-23935107)
[»] scaffold0063 (1 HSPs)
scaffold0063 (226-308)||(38253-38335)
[»] chr7 (1 HSPs)
chr7 (226-308)||(18184205-18184287)


Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 312
Target Start/End: Original strand, 8259581 - 8259876
Alignment:
Q  18 cagtcaagtgtctatgacacttgtggaatcgacaatactttgttttatcggttcccttattttcctgagtaggagtttttggcgggtttgatcccaactt 117  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8259581 cagtcaagtgtctatgacacttgtggaatcggcaatactttgttttatcggttcccttattttcttgagtaggagtttttggcgggtttgatcccaactt 8259680  T
Q  118 ctttcagatcggcaattgcaatctaagctaggannnnnnn-ccctggacaacgccaaggacatgtattccgtgaagcgaccgacgggtccctcgccttca 216  Q
    |||||||||||| ||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8259681 ctttcagatcggtaattgcaatctaagctaggattttttttccctggacaacgccaaggacatgtattccgtgaagcgaccgacgggtccctcgccttca 8259780  T
Q  217 tgggcaggcttgccttccttctttttctcttggaatggctttttggaagattcaaaagcatgttcttccttcctggatttgttgaggttgtctgtg 312  Q
     |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8259781 cgggcaggctttccttccttctttttctcttggaatggctttttggaagattcaaaagcatgttcttccttcctggatttgttgaggctgtctgtg 8259876  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 288
Target Start/End: Complemental strand, 10849577 - 10849476
Alignment:
Q  187 gtgaagcgaccgacgggtccctcgccttcatgggcaggcttgccttccttctttttctcttggaatggctttttggaagattcaaaagcatgttcttcct 286  Q
    |||||||||||| | || || | ||||||| ||| ||  |||||| ||||||||||||| ||||| |||||| | || |||||| ||||| |||| ||||    
T  10849577 gtgaagcgaccgcctggccctttgccttcaaggggagctttgcctcccttctttttctcatggaagggctttctagaggattcagaagcaagttcctcct 10849478  T
Q  287 tc 288  Q
    ||    
T  10849477 tc 10849476  T

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Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 21 - 299
Target Start/End: Original strand, 15270430 - 15270705
Alignment:
Q  21 tcaagtgtctatgacacttgtggaatcgacaatactttgttttatcggttcccttattttcctgagtaggagtttttggcgggtttgatcccaacttctt 120  Q
    |||||||| | |||||||||||||| |||  |||||||||||||| ||||||||| || |||||||  ||||  ||||| || ||||| |||| | ||||    
T  15270430 tcaagtgtatgtgacacttgtggaaccgaatatactttgttttattggttcccttcttctcctgagagggagcctttggtgg-tttga-cccagcctctt 15270527  T
Q  121 tcagatcggcaattgcaatctaagctaggannnnnnnccctggacaacgccaaggacatgtattccgtgaagcgaccgacgggtccctcgccttcatggg 220  Q
    |   || ||||||||| |||| ||||||||       | ||||||| ||||||||   |||| |||||||||||||||||  |||  |  |||||  |||    
T  15270528 ttgaattggcaattgcgatctcagctaggattttat-cactggacatcgccaagggtgtgtactccgtgaagcgaccgacaagtctttttccttcccggg 15270626  T
Q  221 caggcttgccttccttctttttctcttggaatggctttttggaagattcaaaagcatgttcttccttcctggatttgtt 299  Q
    ||||  ||||||||||||| |||||||||||  || ||||||||||||||  | |||| ||||||||  ||||||||||    
T  15270627 caggaatgccttccttcttcttctcttggaagagcattttggaagattcaccaacatgatcttccttattggatttgtt 15270705  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 22619455 - 22619373
Alignment:
Q  226 ttgccttccttctttttctcttggaatggctttttggaagattcaaaagcatgttcttccttcctggatttgttgaggttgtc 308  Q
    |||||||||||||||||||| ||||| |||||||||||  |||||  |||| | || ||||||||||||||||||||||||||    
T  22619455 ttgccttccttctttttctcatggaagggctttttggagaattcagcagcaggctcctccttcctggatttgttgaggttgtc 22619373  T

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Target: scaffold0483 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 7878 - 7960
Alignment:
Q  226 ttgccttccttctttttctcttggaatggctttttggaagattcaaaagcatgttcttccttcctggatttgttgaggttgtc 308  Q
    |||||||||||||||||||| ||||| ||| ||||||| |||||| ||||| | || |||||||| |||||||||||||||||    
T  7878 ttgccttccttctttttctcatggaagggcgttttggaggattcagaagcaggctcctccttcctagatttgttgaggttgtc 7960  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 225 - 310
Target Start/End: Original strand, 27345778 - 27345863
Alignment:
Q  225 cttgccttccttctttttctcttggaatggctttttggaagattcaaaagcatgttcttccttcctggatttgttgaggttgtctg 310  Q
    ||||||||||||||||||||| ||||| ||||||||||| || |||  |||| | || ||||||||||||||||||||| ||||||    
T  27345778 cttgccttccttctttttctcgtggaagggctttttggaggactcagcagcaggctcctccttcctggatttgttgaggctgtctg 27345863  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 225 - 308
Target Start/End: Original strand, 23928358 - 23928441
Alignment:
Q  225 cttgccttccttctttttctcttggaatggctttttggaagattcaaaagcatgttcttccttcctggatttgttgaggttgtc 308  Q
    |||||||||| |||||||||| ||||| ||||||||||| ||||||  |||| | || ||||||||||||||||||||| ||||    
T  23928358 cttgccttccctctttttctcatggaagggctttttggaggattcagcagcaggctcctccttcctggatttgttgaggctgtc 23928441  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 29567008 - 29567090
Alignment:
Q  226 ttgccttccttctttttctcttggaatggctttttggaagattcaaaagcatgttcttccttcctggatttgttgaggttgtc 308  Q
    ||||||||| |||||||||| ||||| || |||||||| ||||||  |||| |||| ||||||||||||||||||||| ||||    
T  29567008 ttgccttccctctttttctcatggaagggatttttggaggattcagcagcaggttcctccttcctggatttgttgaggctgtc 29567090  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 19027186 - 19027268
Alignment:
Q  226 ttgccttccttctttttctcttggaatggctttttggaagattcaaaagcatgttcttccttcctggatttgttgaggttgtc 308  Q
    |||||||||||||||||||| ||||| ||||||||||| ||||||  ||||  ||| || ||| |||  ||||||||||||||    
T  19027186 ttgccttccttctttttctcgtggaagggctttttggaggattcagcagcagtttcctcattcttggccttgttgaggttgtc 19027268  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 299
Target Start/End: Original strand, 12092731 - 12092851
Alignment:
Q  179 tgtattccgtgaagcgaccgacgggtccctcgccttcatgggcaggcttgccttccttctttttctcttggaatggctttttggaagattcaaaagcatg 278  Q
    ||||||| |||||||||| || |||||| | || ||||   ||| | || ||||||||||||||||||| ||| |  |||||||||||||||   | | |    
T  12092731 tgtattcggtgaagcgacggatgggtcctttgctttcacatgcatgttttccttccttctttttctcttagaaggattttttggaagattcagcggtagg 12092830  T
Q  279 ttcttccttcctggatttgtt 299  Q
    |||||||||||||| ||||||    
T  12092831 ttcttccttcctggttttgtt 12092851  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 12092573 - 12092618
Alignment:
Q  18 cagtcaagtgtctatgacacttgtggaatcgacaatactttgtttt 63  Q
    ||||||||||||  |||||||||||||| |||||||| ||||||||    
T  12092573 cagtcaagtgtccgtgacacttgtggaaccgacaatattttgtttt 12092618  T

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Target: scaffold0034 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 26342 - 26260
Alignment:
Q  226 ttgccttccttctttttctcttggaatggctttttggaagattcaaaagcatgttcttccttcctggatttgttgaggttgtc 308  Q
    ||||||||| |||||||||| ||||| || |||||||| ||||||  |||| | || ||||||||||||||||||||||||||    
T  26342 ttgccttccctctttttctcatggaagggatttttggaggattcagcagcaggctcctccttcctggatttgttgaggttgtc 26260  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 10270160 - 10270078
Alignment:
Q  226 ttgccttccttctttttctcttggaatggctttttggaagattcaaaagcatgttcttccttcctggatttgttgaggttgtc 308  Q
    ||||||||| |||||||||| ||||| ||||||||||| ||||||  |||| | || ||||||||| ||||||||||||||||    
T  10270160 ttgccttccctctttttctcatggaagggctttttggaggattcagcagcaggctcctccttcctgaatttgttgaggttgtc 10270078  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 16288022 - 16288097
Alignment:
Q  226 ttgccttccttctttttctcttggaatggctttttggaagattcaaaagcatgttcttccttcctggatttgttga 301  Q
    ||||||||| |||||||||| ||||| ||||||||||| |||||| ||||| | || ||||||||||  |||||||    
T  16288022 ttgccttccctctttttctcatggaagggctttttggaggattcagaagcaggctcctccttcctggccttgttga 16288097  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 308
Target Start/End: Complemental strand, 18278083 - 18278000
Alignment:
Q  225 cttgccttccttctttttctcttggaatggctttttggaagattcaaaagcatgttcttccttcctggatttgttgaggttgtc 308  Q
    ||||||||||||||||||||| ||||| ||||||||||| || |||  |||| | || ||| |||||||||| | |||||||||    
T  18278083 cttgccttccttctttttctcgtggaagggctttttggaggactcagcagcaggctcctccgtcctggatttatggaggttgtc 18278000  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 307
Target Start/End: Complemental strand, 21336072 - 21335991
Alignment:
Q  226 ttgccttccttctttttctcttggaatggctttttggaagattcaaaagcatgttcttccttcctggatttgttgaggttgt 307  Q
    ||||||||| |||||||||| ||||| ||||||||||| |||| |  |||| | || | |||||||||||| ||||||||||    
T  21336072 ttgccttccctctttttctcatggaagggctttttggaggatttagcagcaggctccttcttcctggattttttgaggttgt 21335991  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 307
Target Start/End: Original strand, 15311649 - 15311718
Alignment:
Q  238 tttttctcttggaatggctttttggaagattcaaaagcatgttcttccttcctggatttgttgaggttgt 307  Q
    |||||||| ||||| ||||||||||| ||||||   | ||| || |||||||| ||||||||||||||||    
T  15311649 tttttctcatggaagggctttttggaggattcagcggtatgatcatccttcctagatttgttgaggttgt 15311718  T

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Target: scaffold0008 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 308
Target Start/End: Original strand, 251944 - 252027
Alignment:
Q  225 cttgccttccttctttttctcttggaatggctttttggaagattcaaaagcatgttcttccttcctggatttgttgaggttgtc 308  Q
    |||||||||| | |||||||| ||||| ||||||||||| ||||||  |||| | || ||||||||||||||||||||| ||||    
T  251944 cttgccttccctttttttctcatggaagggctttttggaggattcagcagcaggctcctccttcctggatttgttgaggctgtc 252027  T

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Target: scaffold0039 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 179 - 308
Target Start/End: Complemental strand, 114208 - 114082
Alignment:
Q  179 tgtattccgtgaagcgaccgacgggtccctcgccttcatgggcaggcttgccttccttctttttctcttggaatggctttttggaagattcaaaagcatg 278  Q
    ||||||| ||| ||||||| |||||||| |  |||||||||||||||||| ||||||  |||||||  ||||| ||||||||||||||||||  | ||      
T  114208 tgtattctgtgtagcgaccaacgggtccttttccttcatgggcaggcttg-cttcct--tttttctaatggaacggctttttggaagattcagcaacaga 114112  T
Q  279 ttcttccttcctggatttgttgaggttgtc 308  Q
     ||||||||||||  |||||| ||||||||    
T  114111 ctcttccttcctgtttttgtttaggttgtc 114082  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 18734577 - 18734661
Alignment:
Q  226 ttgccttccttctttttctcttggaatggctttttggaagattcaaaagcatgttcttccttcctggatttgttgaggttgtctg 310  Q
    ||||||||| ||||||| || ||||| || |||||| | ||||||| |||| | || ||||||||||||||||||||| ||||||    
T  18734577 ttgccttccctctttttgtcatggaagggatttttgaaggattcaacagcaggctcctccttcctggatttgttgaggctgtctg 18734661  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 310
Target Start/End: Complemental strand, 19861660 - 19861576
Alignment:
Q  226 ttgccttccttctttttctcttggaatggctttttggaagattcaaaagcatgttcttccttcctggatttgttgaggttgtctg 310  Q
    ||||||||| |||||||||  |||||  |||||||||| ||||||  |||| | || |||||| |||||||||||||||||||||    
T  19861660 ttgccttccctctttttctaatggaagagctttttggaggattcagcagcaggctcctccttcttggatttgttgaggttgtctg 19861576  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 308
Target Start/End: Original strand, 23491026 - 23491109
Alignment:
Q  225 cttgccttccttctttttctcttggaatggctttttggaagattcaaaagcatgttcttccttcctggatttgttgaggttgtc 308  Q
    ||||||||||||||| ||||| ||||| ||||||||||| || |||  || | | || |||||||| |||||||||||||||||    
T  23491026 cttgccttccttcttcttctcgtggaagggctttttggaggactcagcagtaggctcctccttcctagatttgttgaggttgtc 23491109  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 42791091 - 42791175
Alignment:
Q  226 ttgccttccttctttttctcttggaatggctttttggaagattcaaaagcatgttcttccttcctggatttgttgaggttgtctg 310  Q
    ||||||||| |||| ||||| ||||| || |||||||| ||||||   ||| | || ||||| ||||||||||||||| ||||||    
T  42791091 ttgccttccctcttcttctcatggaagggatttttggaggattcagcggcaggctcctcctttctggatttgttgaggctgtctg 42791175  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 308
Target Start/End: Complemental strand, 24975409 - 24975326
Alignment:
Q  225 cttgccttccttctttttctcttggaatggctttttggaagattcaaaagcatgttcttccttcctggatttgttgaggttgtc 308  Q
    ||||||||||||||| ||||| ||||| || |||||||| || |||  |||| | || || |||||||||||||||||||||||    
T  24975409 cttgccttccttcttcttctcgtggaagggttttttggaggactcagcagcaggctcctctttcctggatttgttgaggttgtc 24975326  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 303
Target Start/End: Complemental strand, 23935107 - 23934985
Alignment:
Q  181 tattccgtgaagcgaccgacgggtccctcgccttcatgggcaggcttgccttccttctttttctcttggaatggctttttggaagattcaaaagcatgtt 280  Q
    |||||| |||||||||| ||| |||| | ||||||| | ||||| || |||||||| || || || | ||| ||||||||||| ||||||  |||| | |    
T  23935107 tattccatgaagcgaccaacgagtcctttgccttcacgagcaggttttccttcctttttcttgtcatagaagggctttttggaggattcagcagcaggct 23935008  T
Q  281 cttccttcctggatttgttgagg 303  Q
    | |||||||||| ||||||||||    
T  23935007 cctccttcctgggtttgttgagg 23934985  T

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Target: scaffold0063 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 308
Target Start/End: Complemental strand, 38335 - 38253
Alignment:
Q  226 ttgccttccttctttttctcttggaatggctttttggaagattcaaaagcatgttcttccttcctggatttgttgaggttgtc 308  Q
    |||||||||| ||||||||| ||||| || |||||||| ||||||  |||| | || ||||| ||||||||||| ||||||||    
T  38335 ttgccttcctactttttctcatggaagggatttttggaggattcatgagcaggctcctccttactggatttgttaaggttgtc 38253  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 308
Target Start/End: Original strand, 18184205 - 18184287
Alignment:
Q  226 ttgccttccttctttttctcttggaatggctttttggaagattcaaaagcatgttcttccttcctggatttgttgaggttgtc 308  Q
    |||||||||||||||||||| || || | ||||||||| ||||||  |||| | || |||||| |||||||||||||| ||||    
T  18184205 ttgccttccttctttttctcatgcaaggtctttttggaggattcagcagcaggctcctccttcttggatttgttgaggatgtc 18184287  T

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