View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_68 (Length: 315)
Name: NF1435_low_68
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 8946926 - 8946628
Alignment:
| Q |
1 |
acacaccctatatatggcatcccaattactccaattcttctagctcctaaaccataaagttcctgcattattttaggtaataactaatattactggacaa |
100 |
Q |
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| T |
8946926 |
acacaccctatatatggcatgccaattactccaattcttctagctcctaaaccataaagttcctgcattattttaggtaataactaatattactggacaa |
8946827 |
T |
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| Q |
101 |
agaaaacgaagttataagaaacaacattcttattcaaaactctatgaatccatgtttgtataacagaatacctgaatgaagtctaaggcatatgaaatca |
200 |
Q |
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| T |
8946826 |
agaaaatgaagttataagaaacaacattcttattcaaaactctatgaatccatgtttgtataacagaatacctgaatgaagtctaaggcatatgaaatca |
8946727 |
T |
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| Q |
201 |
ataagttagtgtatgctggaatatcatattgtggtttcctaaatggtgtttgagaataagtattggcaatgtcatcagcccctatgcaaataatgtata |
299 |
Q |
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| T |
8946726 |
ataagttagtgtatgctggaatatcatattgtggtttcctaaatggtgtttgagaataagtattggcaatgtcatcagcccctatgcaaataatgtata |
8946628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 8939393 - 8939329
Alignment:
| Q |
1 |
acacaccctatatatggcatcccaattactccaattcttctagctcctaaaccataaagttcctg |
65 |
Q |
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| T |
8939393 |
acacaccctatatttggcataccaattactccaatccttctagctcctaaaccatatagttcctg |
8939329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 153 - 299
Target Start/End: Complemental strand, 8938418 - 8938270
Alignment:
| Q |
153 |
tgtttgtataacagaa--tacctgaatgaagtctaaggcatatgaaatcaataagttagtgtatgctggaatatcatattgtggtttcctaaatggtgtt |
250 |
Q |
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| T |
8938418 |
tgtttgtataacagaacatacttgcaagaagtttgaggcatatgaagccaataagtctgtgtatgatcgaatatcatacttcactctcctatatggtgtt |
8938319 |
T |
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| Q |
251 |
tgagaataagtattggcaatgtcatcagcccctatgcaaataatgtata |
299 |
Q |
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| T |
8938318 |
tgagcataagtattggcaatgtcattacttcctatgcaaataatgtata |
8938270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 31796710 - 31796746
Alignment:
| Q |
241 |
aaatggtgtttgagaataagtattggcaatgtcatca |
277 |
Q |
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| T |
31796710 |
aaatggtgtttgagcataagtattagcaatgtcatca |
31796746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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