View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_7 (Length: 574)
Name: NF1435_low_7
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_7 |
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| [»] scaffold0144 (2 HSPs) |
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| [»] scaffold0133 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 454; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 7 - 543
Target Start/End: Complemental strand, 16871801 - 16871256
Alignment:
| Q |
7 |
tcgaagaatattagtttttatagatgtgtaaattggagaatcaatattagtataatacatagtacagaagttgagatggttagtgcagaattatgtacaa |
106 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16871801 |
tcgaaaaatattagtttttatagatgtgtaaattggagaatcaatattagtataatacatagtacataagttgagatggttagtgcagaattatgtacaa |
16871702 |
T |
|
| Q |
107 |
acctgctggcgtacgtgttggggaaaatatctttgctactacaaattgataaattcactgaataacaatgattttattgatgaaactctaaagaaaatgg |
206 |
Q |
| |
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|||||| || ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
16871701 |
acctgcaggtgtacgcgttggggaaaatacctttgctactacaaattgataaattcactgaataacaacgattttattgatgaaactctaaagaaaatgg |
16871602 |
T |
|
| Q |
207 |
tctcaaacagacattgaatacaagcatttacactg-----ctgcataattgaaattattacaaagaaaacagacacag---tttcactaagtttcgagag |
298 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
16871601 |
tctcaaacagacattgaatacaagcatttacactgctgcgctgcataattgaaa-tattacaaagaaaacagacacagtactgtcactaagtttcgagag |
16871503 |
T |
|
| Q |
299 |
ctcggttctctcccatctaaatcactactcaataaccttacaaaccaatacttgtgttaaaaagttgcagttcaaactaaaaagaatcatcctaagaaac |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16871502 |
ctcggttctctcccatctaaatcactactcaataaccttacaaaccaatacttgtgttaaaaagttgcagttcaaactaaaaagaatcatcctaagaaac |
16871403 |
T |
|
| Q |
399 |
agtcaaatgcatgaata--agatgctgtgttgttttgaagaacatccagatgatgaagcttgagaaagatgtccatgagtctacaatttcttctgctaca |
496 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16871402 |
agtcaaatgcattaataagagatgctgtgttgttttgaagaacatccagatgatgatgcttgagaaagatgtccatgagtctacaatttcttctgctaca |
16871303 |
T |
|
| Q |
497 |
tcaaaataattggatttaggtacaaatcactaacttcctattaatta |
543 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16871302 |
tcaaaataattggatttaggtacaaatcactaacttcctattaatta |
16871256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 131 - 394
Target Start/End: Original strand, 16654596 - 16654858
Alignment:
| Q |
131 |
aaatatctttgctactacaaattgataaattcactgaataacaatgattttattgatgaaactctaaagaaaatggtctcaaacagacattgaatacaag |
230 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| |
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| T |
16654596 |
aaatatctttgctactacaaattgataagttcactgaataacaatgattttattgatgaaactctaaagaaattggtctcaaacggacaatgaatacaaa |
16654695 |
T |
|
| Q |
231 |
catttacactgctgcataattgaaattattacaaagaaaacagacacagtttcactaagtttcgagagctcggttctctcccatctaaatcactactcaa |
330 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||| || |
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| T |
16654696 |
catttacactgctgcataattgaaa-tattacatagaaaacagacatggtttcactaagtttcgagagcttggttctctcccatccaaatcactacccag |
16654794 |
T |
|
| Q |
331 |
taaccttacaaaccaatacttgtgttaaaaagttgcagttcaaactaaaaagaatcatcctaag |
394 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| |
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| T |
16654795 |
taaccttacaaaccaatacttgtgttaaaaagttgcagttaaaactaaaaagattcattctaag |
16654858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 427 - 549
Target Start/End: Original strand, 16654942 - 16655064
Alignment:
| Q |
427 |
tgttttgaagaacatccagatgatgaagcttgagaaagatgtccatgagtctacaatttcttctgctacatcaaaataattggatttaggtacaaatcac |
526 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16654942 |
tgttgtgaagaacatccagatgatgaagcttgagaaagatgtccatgagtctacaatttcttctgctacatcaaaataattggatttaggtacaaatcac |
16655041 |
T |
|
| Q |
527 |
taacttcctattaattaaacaac |
549 |
Q |
| |
|
|||||||| ||||||||||||| |
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| T |
16655042 |
taacttccatttaattaaacaac |
16655064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 149 - 314
Target Start/End: Original strand, 16734470 - 16734634
Alignment:
| Q |
149 |
aaattgataaattcactgaataacaatgattttattgatgaaactctaaagaaaatggtctcaaacagaca-ttgaatacaagcatttacactgctgcat |
247 |
Q |
| |
|
||||||||||||| | | |||||||| |||||||||||||||||| ||| ||| | || ||||||||| | |||||||||| |||||||||||||| | |
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| T |
16734470 |
aaattgataaattgatt-aataacaacaattttattgatgaaactcaaaaaaaagttgtatcaaacagaaaattgaatacaaacatttacactgctgtag |
16734568 |
T |
|
| Q |
248 |
aattgaaattattacaaagaaaacagacacagtttcactaagtttcgagagctcggttctctcccat |
314 |
Q |
| |
|
|||| |||| ||| || ||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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|
| T |
16734569 |
aattaaaat-atttcatagaaaacagacacagtttcactaagtttcgaaagcttggttctctcccat |
16734634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 74 - 312
Target Start/End: Complemental strand, 16770293 - 16770070
Alignment:
| Q |
74 |
aagttgagatggttagtgcagaattatgtacaa---acctgctggcgtacgtgttggggaaaatatctttgctactacaaattgataaattcactgaata |
170 |
Q |
| |
|
||||||||||| |||||||||||| ||| |||| ||||||| ||||||| || | | ||||||||||||||| || |||||||||||||||| ||||| |
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| T |
16770293 |
aagttgagatgcttagtgcagaatcatgcacaacaaacctgcttgcgtacgcgtagagaaaaatatctttgctagtagaaattgataaattcaccgaata |
16770194 |
T |
|
| Q |
171 |
acaatgattttattgatgaaactctaaagaaaatggtctcaaacagacattgaatacaagcatttacactgctgcataattgaaattattacaaagaaaa |
270 |
Q |
| |
|
|||| ||||||||||||||||||| || |||| | || ||||| |||||||||||||||| |||| ||| |||| || |||||| |
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|
| T |
16770193 |
acaacgattttattgatgaaactcaaacgaaagttgtatcaaa-----------------catttacactgctgcagaatt-aaaatatttcatagaaaa |
16770112 |
T |
|
| Q |
271 |
cagacacagtttcactaagtttcgagagctcggttctctccc |
312 |
Q |
| |
|
||||||||||||||| ||||||| |||||| |||||| |||| |
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| T |
16770111 |
cagacacagtttcacaaagtttctagagcttggttctttccc |
16770070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 231 - 314
Target Start/End: Original strand, 16772283 - 16772364
Alignment:
| Q |
231 |
catttacactgctgcataattgaaattattacaaagaaaacagacacagtttcactaagtttcgagagctcggttctctcccat |
314 |
Q |
| |
|
|||||||||||||||| |||| |||| ||| || |||||||||||||| ||| | |||||||||||||| ||||||||||||| |
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|
| T |
16772283 |
catttacactgctgcagaattaaaat-atttcatagaaaacagacacattttg-caaagtttcgagagcttggttctctcccat |
16772364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 16784048 - 16784124
Alignment:
| Q |
60 |
aatacatagtacagaagttgagatggttagtgcagaattatgtacaaacctgctggcgtacgtgttggggaaaatat |
136 |
Q |
| |
|
||||||||||| | || |||||| ||||| |||||||| ||||||||||||| | ||||| | || ||||||||||| |
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|
| T |
16784048 |
aatacatagtataaaaattgagacggttattgcagaatcatgtacaaacctgtttgcgtaggcgtgggggaaaatat |
16784124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 130 - 314
Target Start/End: Complemental strand, 4924 - 4741
Alignment:
| Q |
130 |
aaaatatctttgctactacaaattgataaattcactgaataacaatgattttattgatgaaactctaaagaaaatggtctcaaacagacattgaatacaa |
229 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||| ||||||| | | ||||||||| ||||||||||| |
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|
| T |
4924 |
aaaatatctttgctggtacaaattgataaattcactgaataataacgattttattgatgaaactcaaaagaaagttgaatcaaacagagattgaatacaa |
4825 |
T |
|
| Q |
230 |
gcatttacactgctgcataattgaaattattacaaagaaaacagacacagtttcactaagtttcgagagctcggttctctcccat |
314 |
Q |
| |
|
|||||||||||||||| |||| ||| |||| || ||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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|
| T |
4824 |
acatttacactgctgcagaatt-aaaatatttcatagaaaacagacgcagtttcactaagtttcgagagcttggttctctcccat |
4741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 128 - 283
Target Start/End: Original strand, 6759 - 6913
Alignment:
| Q |
128 |
ggaaaatatctttgctactacaaattgataaattcactgaataacaatgattttattgatgaaactctaaagaaaatggtctcaaacagaca-ttgaata |
226 |
Q |
| |
|
|||||||||||||| || | ||||||||||||| | | |||||||| ||||||| ||||||||| ||||||| | || ||||||||| | ||||||| |
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|
| T |
6759 |
ggaaaatatctttggtagtggaaattgataaattgatt-aataacaacaattttatcaatgaaactccaaagaaagttgtatcaaacagaaaattgaata |
6857 |
T |
|
| Q |
227 |
caagcatttacactgctgcataattgaaattattacaaagaaaacagacacagtttc |
283 |
Q |
| |
|
||| |||||||||||||| | |||| ||| |||| || ||||||||||||||||||| |
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|
| T |
6858 |
caaacatttacactgctgtagaatt-aaaatatttcatagaaaacagacacagtttc |
6913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 103 - 313
Target Start/End: Original strand, 15169 - 15377
Alignment:
| Q |
103 |
acaaacctgctggcgtacgtgttggggaaaatatctttgctactacaaattgataaattcactgaataacaatgattttattgatgaaactctaaagaaa |
202 |
Q |
| |
|
||||||||||| |||||| || |||||||||||||||| || | ||||||||||||||| | |||||||| ||||||| | ||||||| ||||||| |
|
|
| T |
15169 |
acaaacctgcttccgtacgcgt-ggggaaaatatctttggtagtggaaattgataaattcatt-aataacaacaattttatcaaggaaactcaaaagaaa |
15266 |
T |
|
| Q |
203 |
atggtctcaaacagaca-ttgaatacaagcatttacactgctgcataattgaaattattacaaagaaaacagacacagtttcactaagtttcgagagctc |
301 |
Q |
| |
|
| || ||||||||| | |||||||||| |||||||||||||| | |||| |||| ||| || |||||||||||||||||||||||||||||||||||| |
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|
| T |
15267 |
gttgtatcaaacagaaaattgaatacaaacatttacactgctgtagaattaaaat-atttcatagaaaacagacacagtttcactaagtttcgagagctt |
15365 |
T |
|
| Q |
302 |
ggttctctccca |
313 |
Q |
| |
|
|||||||||||| |
|
|
| T |
15366 |
ggttctctccca |
15377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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