View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1435_low_71 (Length: 302)
Name: NF1435_low_71
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_71 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 10 - 284
Target Start/End: Complemental strand, 5396406 - 5396132
Alignment:
| Q |
10 |
aagaatattggtatgcttttgtttgttgcagcagaagtaatgaatgaggagttgagagagcacaacaaatttatagaaaaccaaaaatgtcttaaactat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5396406 |
aagaatattggtatgcttttgtttgttgcagcagaagtaatgaatgaggagttgagagagcacaacacatttatagaaaaccaaaaatgtcttaaactat |
5396307 |
T |
|
| Q |
110 |
aaagtacagcaagaacatgttagatatttgactaaacaacctttttgttggcttacgtgtatatttatttttggatacatgacgtgggaacctaacttgt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5396306 |
aaagtacagcaagaacatgttagatatttgactaaacaacctttttgttggcttacgtgtatatttatttttggatacatgacgtgggaacctaacttgt |
5396207 |
T |
|
| Q |
210 |
agataaaacttcatcatatttaggatatactcgtacaattatcaatcaatctaaacaagttcaaacatagacagt |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5396206 |
agataaaacttcatcatatttaggatatactcgtacagttatcaatcaatctaaacaagttcaaacatagacagt |
5396132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 238
Target Start/End: Original strand, 5408413 - 5408480
Alignment:
| Q |
171 |
tatttatttttggatacatgacgtgggaacctaacttgtagataaaacttcatcatatttaggatata |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||| |||||| ||| | ||||||| |
|
|
| T |
5408413 |
tatttatttttggatacatgacgtgggaacagaacttttagataaattttcatcttatgttggatata |
5408480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University