View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_72 (Length: 301)
Name: NF1435_low_72
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_72 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 55476952 - 55477178
Alignment:
| Q |
1 |
cgaacctgccaaactgggctgctccttcccaaatggacccccacccgagcaggactacttggcaacttccttgactttgagtctccggcagagttgctcc |
100 |
Q |
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| T |
55476952 |
cgaacctgccaaactgggctgctccttcccaaatggacccccacccgagcaggactacttggcaacttccttgactttgagtctccggcagagttgctcc |
55477051 |
T |
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| Q |
101 |
tcgagcaaggcgcactgtttactttccgggtaaccggagctccggtggaggacttgggtctgctaactgagtttccagaagacctactccgagagaaagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
55477052 |
tcgagcaaggcgcactgtttactttccgggtaaccggagctccggtggaggacttgggtctgctaactgagtttccagaagatctactccgagagaaagg |
55477151 |
T |
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| Q |
201 |
ccatatattgatgttaagttcagctga |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
55477152 |
ccatatattgatgttaagttcagctga |
55477178 |
T |
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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 160
Target Start/End: Original strand, 8845303 - 8845411
Alignment:
| Q |
52 |
ggactacttggcaacttccttgactttgagtctccggcagagttgctcctcgagcaaggcgcactgtttactttccgggtaaccggagctccggtggagg |
151 |
Q |
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|||||||||||| | || || |||||||| |||||||| |||||||| | || ||||| |||||||| ||||||||||| ||||||||||||||| || |
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| T |
8845303 |
ggactacttggccattttctcgactttgattctccggcggagttgctacgagaacaaggtgcactgttaactttccgggtcaccggagctccggtgaaga |
8845402 |
T |
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| Q |
152 |
acttgggtc |
160 |
Q |
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| T |
8845403 |
atttgggtc |
8845411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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