View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_73 (Length: 298)
Name: NF1435_low_73
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_73 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 37914605 - 37914885
Alignment:
| Q |
1 |
catcacgagatcaaattctatcataacgaaacagtaattatgaaggtgatagagcagactcaaatttcaccaccaccaagttcacttccatcaccaacga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37914605 |
catcacgagatcaaattctatcataacgaaacagtaattatgaaggtgatagagcagactcaaatttcaccaccaccaagttcacttccatcaccaacga |
37914704 |
T |
|
| Q |
101 |
gaatccctctcactttctttgacatttcttggttttactgcaaannnnnnnttaaacgcatcttcttctaccactttcctcacccaactcatcacttcct |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37914705 |
gaatccctctcactttctttgacatttcttggttttactgcaaacccccccttaaacgcatcttcttctaccactttcctcacccaactcatcacttcct |
37914804 |
T |
|
| Q |
201 |
ccaaacaacacttcctattctcaaacactcactttccttaacccttcaacacttctttcccttcacctccaacctcatcat |
281 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37914805 |
ccaaacaacacttcctattctcaaacactcactttccttaacccttcaacacttctttcccttcacctccaacctcatcat |
37914885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 5 - 281
Target Start/End: Original strand, 37906446 - 37906722
Alignment:
| Q |
5 |
acgagatcaaattctatcataacgaaacagtaattatgaaggtgatagagcagactcaaatttcaccaccaccaagttcacttccatcaccaacgagaat |
104 |
Q |
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|||||| ||||||| |||| ||| | ||||| || |||||||| ||||| || | ||| || |||||||||||| |||||||||||||||||| | | | |
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| T |
37906446 |
acgagaccaaattcaatcacaacaacacagttatgatgaaggtaatagaacatagccaagttgcaccaccaccaaattcacttccatcaccaacaacact |
37906545 |
T |
|
| Q |
105 |
ccctctcactttctttgacatttcttggttttactgcaaannnnnnnttaaacgcatcttcttctaccactttcctcacccaactcatcacttcctccaa |
204 |
Q |
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| T |
37906546 |
ccctctcaccttcttcgacatttcatggttttactgtcaacccactgttaaacgtatcttcttctaccactttcctcacccaactcatcacttcctccaa |
37906645 |
T |
|
| Q |
205 |
acaacacttcctattctcaaacactcactttccttaacccttcaacacttctttcccttcacctccaacctcatcat |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37906646 |
acaacacttcctattctcaaacactcactttccttaacccttcaacacttctttcccttcacctccaacctcatcat |
37906722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 155 - 279
Target Start/End: Complemental strand, 37961472 - 37961348
Alignment:
| Q |
155 |
aacgcatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttccttaacccttcaacactt |
254 |
Q |
| |
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|||| |||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||||| | |||||| |
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| T |
37961472 |
aacgtatcttcttctaccattttcctcatccaactcatcatttccttcaaacaacacttcccattctcaaacactcactttccataaccctcctacactt |
37961373 |
T |
|
| Q |
255 |
ctttcccttcacctccaacctcatc |
279 |
Q |
| |
|
||| || || |||| ||||||||| |
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|
| T |
37961372 |
cttccctttttcctctaacctcatc |
37961348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 98
Target Start/End: Complemental strand, 37961584 - 37961526
Alignment:
| Q |
40 |
atgaaggtgatagagcagactcaaatttcaccaccaccaagttcacttccatcaccaac |
98 |
Q |
| |
|
|||||||||||||| || | |||| || |||||||||||| ||||||| |||||||||| |
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| T |
37961584 |
atgaaggtgatagaacatagtcaagttgcaccaccaccaaattcacttacatcaccaac |
37961526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 152 - 260
Target Start/End: Original strand, 3782862 - 3782970
Alignment:
| Q |
152 |
ttaaacgcatcttcttctaccactttcctcacccaactcatcacttcctccaaacaacacttcctattctcaaacactcactttccttaacccttcaaca |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||| |||||||||||||| |||||| | ||||| |||| |
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| T |
3782862 |
ttaaacgcatcttcttctaccactttcctcatccaactcatcactttctccaaacaatacttcccattctcaaacactctctttccatcaccctcgaaca |
3782961 |
T |
|
| Q |
252 |
cttctttcc |
260 |
Q |
| |
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||||||||| |
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|
| T |
3782962 |
cttctttcc |
3782970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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