View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1435_low_77 (Length: 292)

Name: NF1435_low_77
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1435_low_77
NF1435_low_77
[»] chr8 (3 HSPs)
chr8 (1-279)||(1409225-1409503)
chr8 (1-99)||(5981452-5981552)
chr8 (1-99)||(5981744-5981843)
[»] chr4 (4 HSPs)
chr4 (5-75)||(4469202-4469272)
chr4 (1-131)||(11307268-11307400)
chr4 (35-75)||(16559370-16559410)
chr4 (193-237)||(30551590-30551634)
[»] chr7 (1 HSPs)
chr7 (29-72)||(22562032-22562075)
[»] chr1 (2 HSPs)
chr1 (36-74)||(5822175-5822213)
chr1 (5-74)||(43834547-43834618)
[»] chr5 (1 HSPs)
chr5 (197-245)||(13097462-13097510)
[»] chr2 (1 HSPs)
chr2 (1-74)||(19548192-19548267)


Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 1409225 - 1409503
Alignment:
Q  1 ttggatatataagggaggggacccatagctaatgtcttaagattttggatgaaaatgtgatgtctaagtctcttagtgatcctggatatttagcccatta 100  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||    
T  1409225 ttggatatataagggaggggatccatagctaatttcttaagattttggatgaaaatgtggtgtctaagtttcttagtgatcctggatatttaacccatta 1409324  T
Q  101 cctctcccagcgttccctgaactccccaacactttcatttccattgaaaattgaaccatcaacctatttatcacttcactcggttagagttggtttgaga 200  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1409325 cctctcccgacgttccctgaactccccaacactttcatttccattgaaaattgaaccatcaacctatttatcacttcactcggttagagatggtttgaga 1409424  T
Q  201 tttgttagaattattttaacattgtttaaagtagttacaagttaggtttttgagcaaattaaataattggttatatttg 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1409425 tttgttagaattattttaacattgtttaaagtagttacaagttaggtttttgagcaaattaaataattggttatatttg 1409503  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 5981552 - 5981452
Alignment:
Q  1 ttggatatataagggaggggacccat--agctaatgtcttaagattttggatgaaaatgtgatgtctaagtctcttagtgatcctggatatttagcccat 98  Q
    ||||||||||||| ||||||||||||  | || ||| |||||| |||||| || ||||||| ||||||||||||||| || | |||||  ||||||||||    
T  5981552 ttggatatataagagaggggacccatgtacctgatgccttaaggttttgggtggaaatgtggtgtctaagtctcttattggttctggacgtttagcccat 5981453  T
Q  99 t 99  Q
    |    
T  5981452 t 5981452  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 5981843 - 5981744
Alignment:
Q  1 ttggatatataagggaggggacccatag-ctaatgtcttaagattttggatgaaaatgtgatgtctaagtctcttagtgatcctggatatttagcccatt 99  Q
    ||||||||||||| |||||||||||||  | | || |||||| |||||| || | ||||| ||||||||||||||| || |||| ||  |||||||||||    
T  5981843 ttggatatataagagaggggacccataaaccattgccttaaggttttgggtggagatgtggtgtctaagtctcttactggtccttgaagtttagcccatt 5981744  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 4469202 - 4469272
Alignment:
Q  5 atatataagggaggggacccatagctaatgtcttaagattttggatgaaaatgtgatgtctaagtctctta 75  Q
    ||||||||| |||||||| ||   ||||||||||||| |||||| |||||||||||||||| |||||||||    
T  4469202 atatataagagaggggacacacgtctaatgtcttaaggttttgggtgaaaatgtgatgtctgagtctctta 4469272  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 11307400 - 11307268
Alignment:
Q  1 ttggatatataagggaggggaccc--atagctaatgtcttaagattttggatgaaaatgtgatgtctaagtctcttagtgatcctggatatttagcccat 98  Q
    ||||||||||||| |||||||| |  ||| || ||| |||||  |||||| || | ||||| |||||||||||||||||| ||||| | |||||||  ||    
T  11307400 ttggatatataagagaggggacacgtatacctgatgccttaatgttttgggtggagatgtggtgtctaagtctcttagtggtcctgaacatttagcttat 11307301  T
Q  99 tacctctcccagcgttccctgaactccccaaca 131  Q
    |  | ||||||| | |||||  |||||||||||    
T  11307300 tgtcgctcccagtgctccctagactccccaaca 11307268  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 16559370 - 16559410
Alignment:
Q  35 tcttaagattttggatgaaaatgtgatgtctaagtctctta 75  Q
    ||||||||||||||||| | ||||| |||||||||||||||    
T  16559370 tcttaagattttggatggagatgtggtgtctaagtctctta 16559410  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 237
Target Start/End: Complemental strand, 30551634 - 30551590
Alignment:
Q  193 gtttgagatttgttagaattattttaacattgtttaaagtagtta 237  Q
    ||||||||||||||| |||||||| || ||||||||| |||||||    
T  30551634 gtttgagatttgttaaaattatttgaatattgtttaaggtagtta 30551590  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 22562032 - 22562075
Alignment:
Q  29 ctaatgtcttaagattttggatgaaaatgtgatgtctaagtctc 72  Q
    |||||| |||||||||||||||||| || |||||||||||||||    
T  22562032 ctaatgccttaagattttggatgaagatatgatgtctaagtctc 22562075  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 5822175 - 5822213
Alignment:
Q  36 cttaagattttggatgaaaatgtgatgtctaagtctctt 74  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  5822175 cttaagattttagatgaaaatgtgatgtttaagtctctt 5822213  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 43834547 - 43834618
Alignment:
Q  5 atatataagggaggggacccatag--ctaatgtcttaagattttggatgaaaatgtgatgtctaagtctctt 74  Q
    ||||||||| |||||||||||||   ||||||||||||| |||| |||| | |||||  |||||||||||||    
T  43834547 atatataagagaggggacccatatacctaatgtcttaaggtttttgatggagatgtggcgtctaagtctctt 43834618  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 13097510 - 13097462
Alignment:
Q  197 gagatttgttagaattattttaacattgtttaaagtagttacaagttag 245  Q
    |||||||| || | ||| ||||||||||||||||||||||| |||||||    
T  13097510 gagatttggtatacttagtttaacattgtttaaagtagttaaaagttag 13097462  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 19548192 - 19548267
Alignment:
Q  1 ttggatatataagggaggggacccatag--ctaatgtcttaagattttggatgaaaatgtgatgtctaagtctctt 74  Q
    ||||||||||||| |||| ||||||||   ||||||||||||| |||||| || | ||||| ||| ||||||||||    
T  19548192 ttggatatataagagaggagacccatatatctaatgtcttaaggttttgggtggagatgtggtgtataagtctctt 19548267  T

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