View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1435_low_80 (Length: 290)
Name: NF1435_low_80
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_80 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 280
Target Start/End: Original strand, 15849988 - 15850255
Alignment:
| Q |
13 |
tgatactcctatagtgcttccgaagcttgataacatagttatctctgactctgaccccatacctaagaactcagcagagtttgtgtctgctactgagttt |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| ||||||| || |||||||||||||||||||||||| |
|
|
| T |
15849988 |
tgatactcctatagtgcttctgaagcttgataacatagttatctctgactctgacccaagacctcagaactctgctgagtttgtgtctgctactgagttt |
15850087 |
T |
|
| Q |
113 |
caacattctcagcggatgttagagctgaattggcttctcaacatgttgttcaaatttaaatgcagaaccaacttaaagggcaattagagactcaagttgt |
212 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15850088 |
caacattcttagcggatgttagagctgaattggcttctcgacatgttgttcaaatttaaatgcagaaccaacttaaagggcaattagagactcaagttgt |
15850187 |
T |
|
| Q |
213 |
agtgaagactcaacctatgaagcacggacacctcttgaaccaaccgtgttacggtgtccgacattcct |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||| |
|
|
| T |
15850188 |
agtgaagactcaacctatgaagcacggacacctcttgaaccagccgtattacggtgtccgacactcct |
15850255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 43921666 - 43921714
Alignment:
| Q |
227 |
ctatgaagcacggacacctcttgaaccaaccgtgttacggtgtccgaca |
275 |
Q |
| |
|
||||||||||||||||||||| | || | |||||| ||||||||||||| |
|
|
| T |
43921666 |
ctatgaagcacggacacctctaggactagccgtgtcacggtgtccgaca |
43921714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University