View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1435_low_83 (Length: 283)

Name: NF1435_low_83
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1435_low_83
NF1435_low_83
[»] chr5 (6 HSPs)
chr5 (17-277)||(12597281-12597541)
chr5 (99-178)||(15805346-15805425)
chr5 (188-274)||(15805133-15805219)
chr5 (202-276)||(20840260-20840334)
chr5 (169-247)||(15805208-15805286)
chr5 (190-260)||(15805243-15805313)
[»] chr8 (12 HSPs)
chr8 (204-276)||(31177846-31177918)
chr8 (188-277)||(3389166-3389255)
chr8 (77-135)||(3389031-3389089)
chr8 (189-277)||(3319748-3319836)
chr8 (190-260)||(3366280-3366350)
chr8 (199-260)||(3319813-3319874)
chr8 (89-133)||(3319985-3320029)
chr8 (89-135)||(3405545-3405591)
chr8 (89-178)||(31177968-31178057)
chr8 (99-137)||(3430516-3430554)
chr8 (99-135)||(3366429-3366465)
chr8 (216-276)||(3396769-3396829)
[»] chr7 (1 HSPs)
chr7 (91-175)||(8369937-8370021)
[»] chr2 (1 HSPs)
chr2 (77-133)||(14765610-14765666)


Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 277
Target Start/End: Complemental strand, 12597541 - 12597281
Alignment:
Q  17 gctttttcatttgtcacattcgcagtactattccaagtgctacccatacaaggtcaatacaaaattgtggatatctcaattttggttcaagcacaaacat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12597541 gctttttcatttgtcacattcgcagtactattccaagtgctacccatacaaggtcaatacaaaattgtggatatctcaattttggttcaagcacaaacat 12597442  T
Q  117 tctcccactctctttgcaaatcctatgaatatttttccgtttggcttcagtaatggctcattttttacagtaagtgatggtcgtacttcctcttcagctg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12597441 tctcccactctctttgcaaatcctatgaatatttttccgtttggcttcagtaatggctcattttttacagtaagtgatggtcgtacttcctcttcagctg 12597342  T
Q  217 atggctccgttttcccattcggtgatggttgcacctccacttcatgtaatggctcaatttt 277  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12597341 atggctccgttttcccattcggtgatggttgcacctccacttcatgtaatggctcaatttt 12597281  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 178
Target Start/End: Complemental strand, 15805425 - 15805346
Alignment:
Q  99 tggttcaagcacaaacattctcccactctctttgcaaatcctatgaatatttttccgtttggcttcagtaatggctcatt 178  Q
    ||||||||||| ||||||||||||||||||||||||| || | | ||||||||||  ||||  ||| ||||||| |||||    
T  15805425 tggttcaagcataaacattctcccactctctttgcaagtcttgtaaatatttttctatttgcgttcggtaatggttcatt 15805346  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 274
Target Start/End: Complemental strand, 15805219 - 15805133
Alignment:
Q  188 aagtgatggtcgtacttcctcttcagctgatggctccgttttcccattcggtgatggttgcacctccacttcatgtaatggctcaat 274  Q
    |||||||||| ||| || |||||| || |||| |||| ||||| || |  |||||| |||||| |||||||||||||||||||||||    
T  15805219 aagtgatggttgtagttgctcttcggccgatgcctccattttcacactaagtgatgattgcacttccacttcatgtaatggctcaat 15805133  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 276
Target Start/End: Complemental strand, 20840334 - 20840260
Alignment:
Q  202 cttcctcttcagctgatggctccgttttcccattcggtgatggttgcacctccacttcatgtaatggctcaattt 276  Q
    ||||| |||||| |||||||||||||||| |||  |||||||||||| | ||||||||| ||| ||| |||||||    
T  20840334 cttccacttcaggtgatggctccgttttcgcatcaggtgatggttgcgcgtccacttcaggtattggttcaattt 20840260  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 247
Target Start/End: Complemental strand, 15805286 - 15805208
Alignment:
Q  169 atggctcattttttacagtaagtgatggtcgtacttcctcttcagctgatggctccgttttcccattcggtgatggttg 247  Q
    |||||||  |||| ||| || |||||||| |||| |||||||||||||||| |||||||||| |||   ||||||||||    
T  15805286 atggctctattttcacattaggtgatggttgtacatcctcttcagctgatgcctccgttttcacatcaagtgatggttg 15805208  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 15805313 - 15805243
Alignment:
Q  190 gtgatggtcgtacttcctcttcagctgatggctccgttttcccattcggtgatggttgcacctccacttca 260  Q
    |||||||| || ||||||||| ||||||||||||  ||||| |||| ||||||||||| || ||| |||||    
T  15805313 gtgatggttgtgcttcctctttagctgatggctctattttcacattaggtgatggttgtacatcctcttca 15805243  T

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Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 204 - 276
Target Start/End: Complemental strand, 31177918 - 31177846
Alignment:
Q  204 tcctcttcagctgatggctccgttttcccattcggtgatggttgcacctccacttcatgtaatggctcaattt 276  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||  |||||||||||||||||||||||||    
T  31177918 tcctcttcagctgatggctccgttttcacattaggtgatggttgcatttccacttcatgtaatggctcaattt 31177846  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 188 - 277
Target Start/End: Original strand, 3389166 - 3389255
Alignment:
Q  188 aagtgatggtcgtacttcctcttcagctgatggctccgttttcccattcggtgatggttgcacctccacttcatgtaatggctcaatttt 277  Q
    |||||||||| |||||||||||||||||||||| ||| ||||  |||| ||||| |||| ||  |||||||||||||||||||| |||||    
T  3389166 aagtgatggttgtacttcctcttcagctgatggatccatttttacattgggtgacggtttcaattccacttcatgtaatggctccatttt 3389255  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 135
Target Start/End: Original strand, 3389031 - 3389089
Alignment:
Q  77 aaaattgtggatatctcaattttggttcaagcacaaacattctcccactctctttgcaa 135  Q
    |||||||| || ||||||||| ||||||||||| |||||||||||||||||||||||||    
T  3389031 aaaattgttgagatctcaattatggttcaagcataaacattctcccactctctttgcaa 3389089  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 189 - 277
Target Start/End: Complemental strand, 3319836 - 3319748
Alignment:
Q  189 agtgatggtcgtacttcctcttcagctgatggctccgttttcccattcggtgatggttgcacctccacttcatgtaatggctcaatttt 277  Q
    ||||||||| ||| |||| |||||||||||| ||| |||||  |||| ||||||||||| |  |||||||||||||||||||| |||||    
T  3319836 agtgatggttgtatttccacttcagctgatgtctcggtttttacattgggtgatggttggaattccacttcatgtaatggctccatttt 3319748  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 190 - 260
Target Start/End: Complemental strand, 3366350 - 3366280
Alignment:
Q  190 gtgatggtcgtacttcctcttcagctgatggctccgttttcccattcggtgatggttgcacctccacttca 260  Q
    |||||||| |||||||||||||||||||||| || |||||| |||| || ||||||||||| ||| |||||    
T  3366350 gtgatggttgtacttcctcttcagctgatggttctgttttcacattaggagatggttgcacatcctcttca 3366280  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 3319874 - 3319813
Alignment:
Q  199 gtacttcctcttcagctgatggctccgttttcccattcggtgatggttgcacctccacttca 260  Q
    ||||||||||||||||||||||||||||||||  |||| |||||||||| |  |||||||||    
T  3319874 gtacttcctcttcagctgatggctccgttttcaaattcagtgatggttgtatttccacttca 3319813  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 3320029 - 3319985
Alignment:
Q  89 atctcaattttggttcaagcacaaacattctcccactctctttgc 133  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||    
T  3320029 atctcaattttggttcaagcataaacattttcccactctctttgc 3319985  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 3405545 - 3405591
Alignment:
Q  89 atctcaattttggttcaagcacaaacattctcccactctctttgcaa 135  Q
    ||||||||| ||||||||||| |||||| ||||||||||||||||||    
T  3405545 atctcaattctggttcaagcataaacatcctcccactctctttgcaa 3405591  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 178
Target Start/End: Complemental strand, 31178057 - 31177968
Alignment:
Q  89 atctcaattttggttcaagcacaaacattctcccactctctttgcaaatcctatgaatatttttccgtttggcttcagtaatggctcatt 178  Q
    ||||||||| ||| ||||||| ||||||||||||| ||||||||||| || | |||| |||||||  |||| |||| ||| ||| |||||    
T  31178057 atctcaattctggatcaagcataaacattctcccagtctctttgcaagtcttgtgaagatttttctatttgtcttcggtattggttcatt 31177968  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Complemental strand, 3430554 - 3430516
Alignment:
Q  99 tggttcaagcacaaacattctcccactctctttgcaaat 137  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  3430554 tggttcatgcataaacattctcccactctctttgcaaat 3430516  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 3366465 - 3366429
Alignment:
Q  99 tggttcaagcacaaacattctcccactctctttgcaa 135  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  3366465 tggttcatgcataaacattctcccactctctttgcaa 3366429  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 3396769 - 3396829
Alignment:
Q  216 gatggctccgttttcccattcggtgatggttgcacctccacttcatgtaatggctcaattt 276  Q
    |||| |||||||||| |||   ||||||||||||||||||||||| ||| ||| |||||||    
T  3396769 gatgactccgttttcacatcgagtgatggttgcacctccacttcaggtattggttcaattt 3396829  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 175
Target Start/End: Original strand, 8369937 - 8370021
Alignment:
Q  91 ctcaattttggttcaagcacaaacattctcccactctctttgcaaatcctatgaatatttttccgtttggcttcagtaatggctc 175  Q
    ||||||||||||||||||| ||||||| ||| |||| ||||||||||| ||| || || |||   ||||||||  ||||||||||    
T  8369937 ctcaattttggttcaagcataaacattttcctactccctttgcaaatcttataaagatattttgatttggctttggtaatggctc 8370021  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 14765610 - 14765666
Alignment:
Q  77 aaaattgtggatatctcaattttggttcaagcacaaacattctcccactctctttgc 133  Q
    |||||||| || ||||| ||||||||||||||| ||||||| ||| |||||||||||    
T  14765610 aaaattgttgagatctcgattttggttcaagcataaacattttcctactctctttgc 14765666  T

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