View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1435_low_9 (Length: 546)
Name: NF1435_low_9
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 14 - 530
Target Start/End: Original strand, 47028914 - 47029430
Alignment:
| Q |
14 |
gaagccagcacaaaggaaacgacagtcggagaaaaatacacggtatacaaagaacagaagcattcaaaacacttagtgcatacaagaaatatttcaaagt |
113 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47028914 |
gaagccagcacaaaggaaacgacagtccgagaaaaatacacagtatacaaagaacagaagcattcaaaacacttagtgcatacaagaaatatttcaaagt |
47029013 |
T |
|
| Q |
114 |
cggatacatacacagtggccaccaaaagacacgaggcaccgagcccttgttcaaaacaaattacatctagacaatctcccattcgttaaactccttgcag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47029014 |
cggatacatacacagtggccaccaaaagacacgaggcaccgagcccttgttcaaaacaaattacatctagacaatctcccattcgttaaactccttgcag |
47029113 |
T |
|
| Q |
214 |
caatcaagctcgtccagcttcaaaaccacgccaggattgaattgttggatctgggcaatggcgttattaaatgagtccagacgtactttgcaaacttggt |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
47029114 |
caatcaagctcgtccagcttcaaaaccacgccaggattgaattgttggatctgggcaatggcgttattaaaggagtccagacgtactttgcaaacttggt |
47029213 |
T |
|
| Q |
314 |
ccaccaaaccgtccctctcaactttaaagcagcaaactcctctctttcttcacggcctccagatcctcctcggataggattgacttctccattaatgaag |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
47029214 |
ccaccaaaccgtccctctcaactttaaagcagcaaactcctctctttcttcacggcctccagatcctcctcagataggattgacttctccattaatgaag |
47029313 |
T |
|
| Q |
414 |
taactcttttgtggccagccttagctcttccaccttagcacccttttcgactaacataaccttcaaccttctttctagagccgtaatagtcctggccttc |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
47029314 |
taactcttttgtggccagccttagctcttcctccttagcacccttttcgactaacataaccttcaaccttctttctagggccgtaatagtcctggccttc |
47029413 |
T |
|
| Q |
514 |
tccattaatgaagtttg |
530 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
47029414 |
tccattaatgaagtttg |
47029430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University