View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_91 (Length: 265)
Name: NF1435_low_91
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_91 |
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| [»] scaffold0005 (1 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 22051785 - 22052025
Alignment:
| Q |
16 |
gtttctctatctgctagtaattcaaatatgtctgctagtgctaatatcaaggaattctctatccttaaggcttttaatgtctcaattaaccctccaagat |
115 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
22051785 |
gtttctctatctgctagtaattcaaatttgtctgctagtgctaatatcaaggaattctctatccttaaggcttttaatgtctcaattaaccctccaaggt |
22051884 |
T |
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| Q |
116 |
tgcttatggttaacgaggttctttggtgccctcctttggctggttggat-aaagggaattgtgatggcaccttagcatcaggtaaggcttcttgtggtgc |
214 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
22051885 |
tgcttatggttaaagaggttctttggtgccctcctttggctggttggataaaagggaattgtgatggcgcctttgcatcaggtaaggcttcttgtggtgc |
22051984 |
T |
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| Q |
215 |
tatttttagaaacaagcttggtcagttcatgggggcctttg |
255 |
Q |
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| T |
22051985 |
tatttttagaaacaagcttggtcagttcatgggggcctttg |
22052025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 43235586 - 43235826
Alignment:
| Q |
16 |
gtttctctatctgctagtaattcaaatatgtctgctagtgctaatatcaaggaattctctatccttaaggcttttaatgtctcaattaaccctccaagat |
115 |
Q |
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|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43235586 |
gtttctctatctactagtaattcaaatctgtctgctagtgctaatatcaaggaattctctatccttaaggcttttaatgtctcaattaacccttcaagat |
43235685 |
T |
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| Q |
116 |
tgcttatggttaacgaggttctttggtgccctcctttggctggttggat-aaagggaattgtgatggcaccttagcatcaggtaaggcttcttgtggtgc |
214 |
Q |
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| T |
43235686 |
tgcttatggttaaagaggttctttggtgccctcctttggctggttggataaaagggaattatgatggcgccttagcatcaggtaaggcttcttgtggtgc |
43235785 |
T |
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| Q |
215 |
tatttttagaaacaagcttggtcagttcatgggggcctttg |
255 |
Q |
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| T |
43235786 |
tatttttagaaacaagcctggtcagttcatgggggcctttg |
43235826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 14627767 - 14627712
Alignment:
| Q |
67 |
gaattctctatccttaaggcttttaatgtctcaattaaccctccaagattgcttat |
122 |
Q |
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| T |
14627767 |
gaattctctatcctaaaggcttttaatgtttcaattcaccctctaaagttgcttat |
14627712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 130 - 247
Target Start/End: Complemental strand, 31438014 - 31437896
Alignment:
| Q |
130 |
gaggttctttggtgccctcctttggctggttggataaaggg-aattgtgatggcaccttagcatcaggtaaggcttcttgtggtgctatttttagaaaca |
228 |
Q |
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|||||| |||||||||||| | ||| ||||||||||||| ||||||||||| | || ||||| ||||||||| ||||||||| || |||||||||| |
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| T |
31438014 |
gaggttatttggtgccctcaaattgcttgttggataaagggtaattgtgatggagcatttgcatctggtaaggctgcttgtggtgaaatctttagaaaca |
31437915 |
T |
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| Q |
229 |
agcttggtcagttcatggg |
247 |
Q |
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| T |
31437914 |
agtttggtcaatttatggg |
31437896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 189616 - 189671
Alignment:
| Q |
67 |
gaattctctatccttaaggcttttaatgtctcaattaaccctccaagattgcttat |
122 |
Q |
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| T |
189616 |
gaattctctatcctaaaggcttttaatgtttcaattcaccctctaaagttgcttat |
189671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 211
Target Start/End: Complemental strand, 44776 - 44651
Alignment:
| Q |
87 |
ttttaatgtctcaattaaccctccaagattgcttatggttaacgaggttctttggtgccctcctttggctggttggat-aaagggaattgtgatggcacc |
185 |
Q |
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||||||||| |||||||| ||||||| ||||||| || || || || |||||||||||||| | | ||||||||| ||||| || |||||||| || |
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| T |
44776 |
ttttaatgtttcaattaatcctccaaagatgcttattgtgaaagaagtgttttggtgccctcctattgttggttggatcaaaggcaactgtgatggagcc |
44677 |
T |
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| Q |
186 |
ttagcatcaggtaaggcttcttgtgg |
211 |
Q |
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|| || || |||||||| |||||||| |
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| T |
44676 |
tttgcttccggtaaggcctcttgtgg |
44651 |
T |
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