View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1435_low_93 (Length: 262)

Name: NF1435_low_93
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1435_low_93
NF1435_low_93
[»] chr2 (21 HSPs)
chr2 (17-207)||(14485121-14485311)
chr2 (17-206)||(14162223-14162412)
chr2 (17-234)||(14494575-14494792)
chr2 (17-205)||(14476122-14476310)
chr2 (21-205)||(14502066-14502250)
chr2 (17-206)||(14144793-14144982)
chr2 (17-201)||(14165288-14165472)
chr2 (17-201)||(14481308-14481492)
chr2 (95-182)||(14575161-14575248)
chr2 (123-182)||(14552198-14552257)
chr2 (122-182)||(15023623-15023683)
chr2 (135-234)||(14152893-14152992)
chr2 (135-185)||(14520122-14520172)
chr2 (95-170)||(14567209-14567284)
chr2 (132-182)||(14850744-14850794)
chr2 (136-178)||(15004186-15004228)
chr2 (129-169)||(14524880-14524920)
chr2 (130-163)||(13707181-13707214)
chr2 (122-178)||(14512269-14512325)
chr2 (122-178)||(14528719-14528775)
chr2 (122-178)||(14542945-14543001)
[»] chr3 (1 HSPs)
chr3 (123-182)||(38525073-38525132)
[»] chr4 (1 HSPs)
chr4 (135-178)||(49553376-49553419)


Alignment Details
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 14485121 - 14485311
Alignment:
Q  17 aaaacctgactctgttctcaacttcttcagaaaccatggtttctcagacacccaactacgcgatatgattgcaaaatcaccaaggctactttcctacgat 116  Q
    ||||||||| || |||||||||||||| ||||||||||||||||| ||  ||||| |||||  | | ||||||||   |||| || | ||||| | ||||    
T  14485121 aaaacctgattcagttctcaacttctttagaaaccatggtttctctgattcccaaatacgcactgtcattgcaaaggaaccacggttgctttcatgcgat 14485220  T
Q  117 ccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacattattaaccttgtcagtaagaacccta 207  Q
    ||||  |||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||| |||||||||||||    
T  14485221 cccttgaaaagggttctgccaaagtttcaattttttctctccaaaggtgcttctaactctgacattgttaacattgttagtaagaacccta 14485311  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 14162412 - 14162223
Alignment:
Q  17 aaaacctgactctgttctcaacttcttcagaaaccatggtttctcagacacccaactacgcgatatgattgcaaaatcaccaaggctactttcctacgat 116  Q
    ||||||||| ||||||||||  ||||| ||||  ||||||||||| ||| ||||| || |  ||||||||   ||  ||||| |||||||||||| |||     
T  14162412 aaaacctgattctgttctcagtttctttagaagtcatggtttctctgactcccaattatgtcatatgattatcaaggcaccatggctactttcctgcgac 14162313  T
Q  117 ccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacattattaaccttgtcagtaagaaccct 206  Q
    |||||||||||| |  | ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||    
T  14162312 ccctccaaaagggtgttgccaaagtttcaattttttctctccaaaggtgcttctaactctgacattgttaaccttgtcagtaagagccct 14162223  T

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Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 14494575 - 14494792
Alignment:
Q  17 aaaacctgactctgttctcaacttcttcagaaaccatggtttctcagacacccaactacgcgatatgattgcaaaatcaccaaggctactttcctacgat 116  Q
    ||||||||||||||||||||||||||| || |||||||||||||| ||  ||||||| | |||||  ||||| ||    ||| |||| |||||||   |     
T  14494575 aaaacctgactctgttctcaacttctttaggaaccatggtttctctgattcccaactgcacgataccattgccaagatgccagggctgctttcctgtaac 14494674  T
Q  117 ccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacattattaaccttgtcagtaagaaccctacagtacttt 216  Q
    |||||||||||| |  | || |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||  |||||||||||| |||  | |    
T  14494675 ccctccaaaagggtgttgcccaagtttcaattttttctctccaaaggcgcttctacctctgacattgttaaccttgtttgtaagaaccctagagtcttgt 14494774  T
Q  217 ctgcaagcctcaacaatc 234  Q
    ||| ||||||||| ||||    
T  14494775 ctgtaagcctcaagaatc 14494792  T

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Target: chr2; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 14476310 - 14476122
Alignment:
Q  17 aaaacctgactctgttctcaacttcttcagaaaccatggtttctcagacacccaactacgcgatatgattgcaaaatcaccaaggctactttcctacgat 116  Q
    |||||||||||||||||||| |||||| |||||| |||||||||||||  ||||||||||  |||  ||| ||||   |||| |||| ||||||| | |     
T  14476310 aaaacctgactctgttctcaccttctttagaaactatggtttctcagattcccaactacgtcataccatttcaaaggaaccatggctgctttcctgcaac 14476211  T
Q  117 ccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacattattaaccttgtcagtaagaaccc 205  Q
    || || |||||| || | |||||||||||||||||||||||||||||||||||||| ||||||||| ||||| || ||| |||||||||    
T  14476210 ccttctaaaagggttttgccaaagtttcaattttttctctccaaaggtgcttctacatctgacattgttaacattatcactaagaaccc 14476122  T

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Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 14502066 - 14502250
Alignment:
Q  21 cctgactctgttctcaacttcttcagaaaccatggtttctcagacacccaactacgcgatatgattgcaaaatcaccaaggctactttcctacgatccct 120  Q
    ||||| ||||||||||| ||||| |||||| ||||||||||  || ||||||||||   ||| ||| | ||  ||||| ||||||| |||| ||| ||||    
T  14502066 cctgattctgttctcaaattctttagaaactatggtttctctaactcccaactacgtcgtatcattcccaaggcaccatggctactctcctgcgacccct 14502165  T
Q  121 ccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacattattaaccttgtcagtaagaaccc 205  Q
    |||||||| |  | || ||||||||||||||||||||||||||||||||||||||||||||| ||||| || | |||||||||||    
T  14502166 ccaaaagggtgttgccgaagtttcaattttttctctccaaaggtgcttctacctctgacattgttaactttatgagtaagaaccc 14502250  T

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Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 14144793 - 14144982
Alignment:
Q  17 aaaacctgactctgttctcaacttcttcagaaaccatggtttctcagacacccaactacgcgatatgattgcaaaatcaccaaggctactttcctacgat 116  Q
    ||||||||| |||||| ||| |||||| |||||| ||||||| |||||  |||||||||| ||| ||||||| ||    ||| |||| ||||||| | |     
T  14144793 aaaacctgaatctgttgtcaccttctttagaaactatggtttttcagattcccaactacgtgatctgattgctaagatgccagggcttctttcctgcaaa 14144892  T
Q  117 ccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacattattaaccttgtcagtaagaaccct 206  Q
    |||| ||||| | |  | ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||  |||||||||||    
T  14144893 cccttcaaaacggtgttgccaaagtttcaattttttctctccaaaggtgcttctaactctgacattgttaaccttgtgtgtaagaaccct 14144982  T

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Target: chr2; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 14165472 - 14165288
Alignment:
Q  17 aaaacctgactctgttctcaacttcttcagaaaccatggtttctcagacacccaactacgcgatatgattgcaaaatcaccaaggctactttcctacgat 116  Q
    ||||||||| ||||||||||  ||||| |||||| |||||||||| ||  ||||||||||| |||||||| | ||     |  |||| ||||| | ||||    
T  14165472 aaaacctgaatctgttctcacattctttagaaactatggtttctctgaatcccaactacgccatatgattcccaagatgtcgcggctgctttcttgcgat 14165373  T
Q  117 ccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacattattaaccttgtcagtaaga 201  Q
    |||||||||||| |  |  |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||    
T  14165372 ccctccaaaagggtgttagcaaagtttcaattttttctctccaaaggtgcttctaactctgacattgttaaccttgtcactaaga 14165288  T

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Target: chr2; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 14481492 - 14481308
Alignment:
Q  17 aaaacctgactctgttctcaacttcttcagaaaccatggtttctcagacacccaactacgcgatatgattgcaaaatcaccaaggctactttcctacgat 116  Q
    ||||||||| || ||| |||||||||| ||||||||||||||||||||||| |||||| |  |||| ||   |||   |||| | || ||||||| | |     
T  14481492 aaaacctgattcagttgtcaacttctttagaaaccatggtttctcagacactcaactatgtcatatcatcataaaggaaccacgacttctttcctgcaag 14481393  T
Q  117 ccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacattattaaccttgtcagtaaga 201  Q
    |||| ||||| | |  | |||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||| ||||||    
T  14481392 ccctgcaaaacgttgttgccaaagtttcaattttgtctctccaaaggtgcttctacctctgacattattaaaattgtctgtaaga 14481308  T

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Target: chr2; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 95 - 182
Target Start/End: Original strand, 14575161 - 14575248
Alignment:
Q  95 accaaggctactttcctacgatccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacatt 182  Q
    |||| |||| ||||||| |||| ||  |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14575161 accatggcttctttcctgcgatacccacaaaagaattctcccaaagtttcaatttttactctccaaaggtgcttctacctctgacatt 14575248  T

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Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 182
Target Start/End: Original strand, 14552198 - 14552257
Alignment:
Q  123 aaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacatt 182  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||    
T  14552198 aaaaggattctcccaaagtttcaatttttactctccataggtgcttcttcctctgacatt 14552257  T

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Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 182
Target Start/End: Original strand, 15023623 - 15023683
Alignment:
Q  122 caaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacatt 182  Q
    ||||| |||||||||||||||||||||||| ||||||||||| |||||||| |||||||||    
T  15023623 caaaacgattctcccaaagtttcaatttttactctccaaaggcgcttctacttctgacatt 15023683  T

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Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 234
Target Start/End: Original strand, 14152893 - 14152992
Alignment:
Q  135 ccaaagtttcaattttttctctccaaaggtgcttctacctctgacattattaaccttgtcagtaagaaccctacagtactttctgcaagcctcaacaatc 234  Q
    ||||||||||||||||| ||||||| ||| |||||||||||||||||| ||||| ||||||  |||| ||||| |||  | | || ||||||||||||||    
T  14152893 ccaaagtttcaatttttcctctccagaggcgcttctacctctgacattgttaacattgtcaccaagagccctagagtcttgtatgtaagcctcaacaatc 14152992  T

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Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 185
Target Start/End: Original strand, 14520122 - 14520172
Alignment:
Q  135 ccaaagtttcaattttttctctccaaaggtgcttctacctctgacattatt 185  Q
    ||||||||||||||||| |||||||||||||||||| ||||||| ||||||    
T  14520122 ccaaagtttcaatttttactctccaaaggtgcttcttcctctgatattatt 14520172  T

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Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 170
Target Start/End: Original strand, 14567209 - 14567284
Alignment:
Q  95 accaaggctactttcctacgatccctccaaaaggattctcccaaagtttcaattttttctctccaaaggtgcttct 170  Q
    |||| |||| ||||||| |||| ||  ||||| |||||| ||||||||||||||||| ||| ||||||||||||||    
T  14567209 accatggcttctttcctgcgatacccacaaaacgattctaccaaagtttcaatttttactcgccaaaggtgcttct 14567284  T

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Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 14850794 - 14850744
Alignment:
Q  132 ctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacatt 182  Q
    |||||||||||||| |||||  ||||||||||||||||| |||||||||||    
T  14850794 ctcccaaagtttcagtttttaatctccaaaggtgcttcttcctctgacatt 14850744  T

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Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 178
Target Start/End: Complemental strand, 15004228 - 15004186
Alignment:
Q  136 caaagtttcaattttttctctccaaaggtgcttctacctctga 178  Q
    ||||||||||||||||||| ||||||||||||||| |||||||    
T  15004228 caaagtttcaattttttctatccaaaggtgcttcttcctctga 15004186  T

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Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 14524880 - 14524920
Alignment:
Q  129 attctcccaaagtttcaattttttctctccaaaggtgcttc 169  Q
    ||||| |||||||||||||||||||| ||||||||||||||    
T  14524880 attcttccaaagtttcaattttttctatccaaaggtgcttc 14524920  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 163
Target Start/End: Complemental strand, 13707214 - 13707181
Alignment:
Q  130 ttctcccaaagtttcaattttttctctccaaagg 163  Q
    |||||||||||||||||||||| |||||||||||    
T  13707214 ttctcccaaagtttcaatttttactctccaaagg 13707181  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 14512269 - 14512325
Alignment:
Q  122 caaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctga 178  Q
    ||||||| || | |||||||||||||||||||| ||||| | ||||||| |||||||    
T  14512269 caaaaggtttttgccaaagtttcaattttttctatccaatgctgcttcttcctctga 14512325  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 14528719 - 14528775
Alignment:
Q  122 caaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctga 178  Q
    ||||||| || | |||||||||||||||||||| ||||| | ||||||| |||||||    
T  14528719 caaaaggtttttgccaaagtttcaattttttctatccaatgctgcttcttcctctga 14528775  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 14542945 - 14543001
Alignment:
Q  122 caaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctga 178  Q
    ||||||| || | |||||||||||||||||||| ||||| | ||||||| |||||||    
T  14542945 caaaaggtttttgccaaagtttcaattttttctatccaatgctgcttcttcctctga 14543001  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 182
Target Start/End: Complemental strand, 38525132 - 38525073
Alignment:
Q  123 aaaaggattctcccaaagtttcaattttttctctccaaaggtgcttctacctctgacatt 182  Q
    |||||||||||||||||||||||||||||  |||||||||||| || |||||||||||||    
T  38525132 aaaaggattctcccaaagtttcaatttttaatctccaaaggtgtttttacctctgacatt 38525073  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 49553376 - 49553419
Alignment:
Q  135 ccaaagtttcaattttttctctccaaaggtgcttctacctctga 178  Q
    ||||||||||||||||| |||||||||||||||||||| |||||    
T  49553376 ccaaagtttcaatttttactctccaaaggtgcttctacttctga 49553419  T

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