View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_94 (Length: 259)
Name: NF1435_low_94
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_94 |
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Alignment Details
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 5 - 106
Target Start/End: Original strand, 8431585 - 8431686
Alignment:
| Q |
5 |
aatgacgcagacatatacaaatgacaatccgcaagcatacccctgcatcaacactcataacagccaaaactgcagcaccacaccaaaaagacagcagcaa |
104 |
Q |
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| T |
8431585 |
aatgacgcagacatatacaaatgacaatccgcaagcatacccctgcatcaacactcataacagccaaaactacagcaccacaccaaaaagacagcagcaa |
8431684 |
T |
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| Q |
105 |
cc |
106 |
Q |
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|| |
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| T |
8431685 |
cc |
8431686 |
T |
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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 31833861 - 31833817
Alignment:
| Q |
4 |
taatgacgcagacatatacaaatgacaatccgcaagcatacccct |
48 |
Q |
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| T |
31833861 |
taatgacgcagacatatacaaatggcaatccgcaagcatacccct |
31833817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 19472770 - 19472716
Alignment:
| Q |
4 |
taatgacgcagacatatacaaatgacaatccgcaagcatacccctgcatcaacac |
58 |
Q |
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| T |
19472770 |
taatgacgcaggcatatacaagtgacagaccacaagcatacccctgcatcaacac |
19472716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 30655761 - 30655815
Alignment:
| Q |
4 |
taatgacgcagacatatacaaatgacaatccgcaagcatacccctgcatcaacac |
58 |
Q |
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| T |
30655761 |
taatgacgccggcatatacaaatgacaatccacaagcatacccctgcgtcaacac |
30655815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 11546739 - 11546685
Alignment:
| Q |
4 |
taatgacgcagacatatacaaatgacaatccgcaagcatacccctgcatcaacac |
58 |
Q |
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|||||||||||||||||||| |||||||||| || | |||||||||| ||||||| |
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| T |
11546739 |
taatgacgcagacatatacatatgacaatcctcatgaatacccctgcgtcaacac |
11546685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 34761134 - 34761080
Alignment:
| Q |
4 |
taatgacgcagacatatacaaatgacaatccgcaagcatacccctgcatcaacac |
58 |
Q |
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||||||||||| |||||||| |||||||||| || | |||||||||| ||||||| |
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| T |
34761134 |
taatgacgcaggcatatacatatgacaatcctcatgaatacccctgcgtcaacac |
34761080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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