View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1435_low_95 (Length: 258)
Name: NF1435_low_95
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1435_low_95 |
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| [»] chr2 (4 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 20 - 258
Target Start/End: Original strand, 8718639 - 8718877
Alignment:
| Q |
20 |
atgaaataaataatgtgtgtaaaaaagaaaacacacaaatatttgactaaataccaagagaataaatgtataataataatgataccaataatcctctatt |
119 |
Q |
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| T |
8718639 |
atgaaataaataatgtgtgtaaaaaagaaaatacacaaatatttgactaaataccaagagaataaatgtataataataatgataccaataatcctctatt |
8718738 |
T |
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| Q |
120 |
tttcactccaaataaattagaactatcatgttctgacgataaaaacagcagcagctatgtcatggaaaaatgaatcagcttgattgaagcaacattcagc |
219 |
Q |
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| T |
8718739 |
tttcactccaaataaattagaactatcatgttctgacgataaaaacagcagcagctatgtcatggaaaaatgaatcagcttgattgaagcaacattcagc |
8718838 |
T |
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| Q |
220 |
ctagtgatgagcatctaatgaaagcttccaagtcttgaa |
258 |
Q |
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| T |
8718839 |
ctagtgatgagcatctaatgaaagcttccaagtcttgaa |
8718877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 258
Target Start/End: Original strand, 8672322 - 8672567
Alignment:
| Q |
15 |
gtgagatgaaataaataatgtgtgtaaaaaagaaaacacacaaatatttgactaaataccaagagaataaatgtataataataatgataccaataatcct |
114 |
Q |
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| T |
8672322 |
gtgacatgaaataaataatgtgtgtaaaaaagaaaatacacaaatatttgactaaataccaagagaataaatgtataataataatgataccaataatcct |
8672421 |
T |
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| Q |
115 |
ctatttttcactccaaataaattagaactatcatgttctgacg--ataaaaacagcagcagctatgtcatggaaaaatgaatcagcttgattgaagcaac |
212 |
Q |
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| T |
8672422 |
ctatttttcactccaaataaattagaactatcatgttctgacgatataaaaacagcagcagctatgtcatggaaaaatgaatcagcttgattgaagcaac |
8672521 |
T |
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| Q |
213 |
attcagcctagtgatgagcatctaatgaaagcttccaagtcttgaa |
258 |
Q |
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| T |
8672522 |
atttagtctaatgatgagcatttaatgaaagcttccaaatcttgaa |
8672567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 8590848 - 8590909
Alignment:
| Q |
56 |
aaatatttgactaaataccaagagaataaatgtataataataatgataccaataatcctctattt |
120 |
Q |
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| T |
8590848 |
aaatatttgacttaataacaagagaataaatgt---ctaataatgataccaataaccctctattt |
8590909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 151
Target Start/End: Original strand, 8590925 - 8590958
Alignment:
| Q |
118 |
tttttcactccaaataaattagaactatcatgtt |
151 |
Q |
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| T |
8590925 |
tttttcactccaaataaattagaactatcatgtt |
8590958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 191 - 258
Target Start/End: Complemental strand, 23440104 - 23440037
Alignment:
| Q |
191 |
gaatcagcttgattgaagcaacattcagcctagtgatgagcatctaatgaaagcttccaagtcttgaa |
258 |
Q |
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| T |
23440104 |
gaatcaacttgattaaagcaactttcagtccagtgatgagcatctaatgaaagcttcaaaatcttgaa |
23440037 |
T |
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