View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1435_low_97 (Length: 258)

Name: NF1435_low_97
Description: NF1435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1435_low_97
NF1435_low_97
[»] chr5 (1 HSPs)
chr5 (13-193)||(14308548-14308728)
[»] chr3 (1 HSPs)
chr3 (16-188)||(2467448-2467620)
[»] chr6 (6 HSPs)
chr6 (14-84)||(7872259-7872329)
chr6 (13-84)||(7815422-7815493)
chr6 (54-211)||(14438152-14438310)
chr6 (13-67)||(7820006-7820060)
chr6 (16-84)||(7818355-7818423)
chr6 (13-78)||(7805793-7805858)
[»] scaffold1089 (1 HSPs)
scaffold1089 (13-220)||(510-718)
[»] chr1 (2 HSPs)
chr1 (14-112)||(37996590-37996688)
chr1 (17-111)||(28720055-28720149)
[»] scaffold1377 (1 HSPs)
scaffold1377 (13-112)||(1343-1442)


Alignment Details
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 14308548 - 14308728
Alignment:
Q  13 cagatcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaacacaagacgtttacaagacatgacaatc 112  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||    
T  14308548 cagatcatgtactattttaaactttcaatgctatggaaatgatcttcgatttgcaacatatattttgcagaacgcaagacgtttgcaagacatgacaatc 14308647  T
Q  113 aacattactactcacccctcaaattggatgcttttgggaaagagacaaattatagaaggattatcctcctgtccaaaaatt 193  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14308648 aacattactacttacccttcaaattggatgcttttgggaaagagacaaattatagaaggattatcctcctatccaaaaatt 14308728  T

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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 2467620 - 2467448
Alignment:
Q  16 atcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaacacaagacgtttacaagacatgacaatcaac 115  Q
    ||||||||| |||||||| ||| || | |  | ||||||||||||||||||| ||||||| ||||||||    |||  ||||||| ||||||||||| ||    
T  2467620 atcatgtacaattttaaattttgaagggtctgcaaatgatcttcgatttgcaacatatatattgcagaatgggagaattttacaaaacatgacaatcgac 2467521  T
Q  116 attactactcacccctcaaattggatgcttttgggaaagagacaaattatagaaggattatcctcctgtccaa 188  Q
     |||| |||  | |||||||| | | |||||||| |||||| ||||| || |||| ||||||||| |||||||    
T  2467520 gttacaactagctcctcaaatggaaagcttttggaaaagagtcaaataattgaagaattatcctcttgtccaa 2467448  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 84
Target Start/End: Original strand, 7872259 - 7872329
Alignment:
Q  14 agatcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaa 84  Q
    ||||||||||||||||||||||| ||  |||  | ||||||||||||||||||| ||||||||||||||||    
T  7872259 agatcatgtactattttaaacttccatggctcagcaaatgatcttcgatttgcaacatatattttgcagaa 7872329  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 7815422 - 7815493
Alignment:
Q  13 cagatcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaa 84  Q
    |||||||||||||||||||||||| ||| |||  | |||||||||||||||| ||  |||||||||||||||    
T  7815422 cagatcatgtactattttaaacttacaaggctcggaaaatgatcttcgatttacaaaatatattttgcagaa 7815493  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 211
Target Start/End: Complemental strand, 14438310 - 14438152
Alignment:
Q  54 atcttcgatttgcagcatatattttgcagaacacaagacgtttacaagacatgacaatcaacattactactcacccctcaaattggatgcttttgggaaa 153  Q
    ||||| |||||||| ||||||||||||||||  | || | ||||||||| ||||||||| || | |||||| |  ||||||     |||||||||  ||     
T  14438310 atcttagatttgcatcatatattttgcagaatgcgaggcttttacaagatatgacaatcgacttaactactaagtcctcaataaacatgcttttgaaaag 14438211  T
Q  154 gagacaaattatagaaggattatcctcctgtccaaaaatttctcaag-atgtaaacttt 211  Q
    ||| ||||||||||||| ||||||||| |||||||  ||||||| || |||||||||||    
T  14438210 gagtcaaattatagaagaattatcctcttgtccaaggatttctccagcatgtaaacttt 14438152  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 7820060 - 7820006
Alignment:
Q  13 cagatcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgca 67  Q
    ||||||||||||||||||||||||| || |||  | |||||||||||||||||||    
T  7820060 cagatcatgtactattttaaactttgaaggctcggaaaatgatcttcgatttgca 7820006  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 7818355 - 7818423
Alignment:
Q  16 atcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaa 84  Q
    ||||||||||||||||||||||||| |||    |||| ||||||||||| || ||||||||||| ||||    
T  7818355 atcatgtactattttaaactttcaaggcttgataaattatcttcgatttacaacatatattttgaagaa 7818423  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 7805858 - 7805793
Alignment:
Q  13 cagatcatgtactattttaaactttcaatgctgcgga-aatgatcttcgatttgcagcatatatttt 78  Q
    ||||||||||||||||||||||||| |  ||| |||| ||||||||||||||||||  |||||||||    
T  7805858 cagatcatgtactattttaaactttgacggct-cggataatgatcttcgatttgcaaaatatatttt 7805793  T

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Target: scaffold1089 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1089
Description:

Target: scaffold1089; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 718 - 510
Alignment:
Q  13 cagatcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaacacaagacgtttacaagacatgacaatc 112  Q
    |||||||||||| |||||||||||| || | |  |  ||| | |||| ||||||| |||||||| |||||||  | ||   ||||||||| |||||||||    
T  718 cagatcatgtacaattttaaactttgaaggatcggctaataaccttctatttgcaacatatattctgcagaatgctaggtttttacaagatatgacaatc 619  T
Q  113 aacattactactcacccctcaaattggatgcttttgggaaagagacaaattatagaaggattatcctcctgtccaaaaatttctcaag-atgtaaacttt 211  Q
     || ||||||||| | ||||||||   |||||||| | || |||  |||||||||||| ||| ||||| |||||||  ||||||| || ||||||||||     
T  618 gacgttactactcgctcctcaaatgaaatgcttttagaaaggagtgaaattatagaagaattgtcctcttgtccaaggatttctccagcatgtaaactta 519  T
Q  212 tatttgaat 220  Q
     ||||||||    
T  518 catttgaat 510  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 112
Target Start/End: Complemental strand, 37996688 - 37996590
Alignment:
Q  14 agatcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaacacaagacgtttacaagacatgacaatc 112  Q
    |||||||||||||||||||||||| || |||  |   |||||||||||||||||  |||||||||||| ||  |||| | |||||||||||||| ||||    
T  37996688 agatcatgtactattttaaactttgaaggctcggcggatgatcttcgatttgcaagatatattttgcataatgcaagtcttttacaagacatgagaatc 37996590  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 28720149 - 28720055
Alignment:
Q  17 tcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaacacaagacgtttacaagacatgacaat 111  Q
    ||||||||||||||||| ||| || |||  | ||||||||| |||||||||   |||||| |||||||  | |||| ||||||||| ||||||||    
T  28720149 tcatgtactattttaaattttgaaggctcggaaaatgatctccgatttgcaaagtatattctgcagaatgcgagacttttacaagaaatgacaat 28720055  T

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Target: scaffold1377 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1377
Description:

Target: scaffold1377; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 1442 - 1343
Alignment:
Q  13 cagatcatgtactattttaaactttcaatgctgcggaaatgatcttcgatttgcagcatatattttgcagaacacaagacgtttacaagacatgacaatc 112  Q
    |||||| ||||| |||||||||||| || |||  |  ||| |||||||||||||| ||||||||||||||||  | || | ||||||||| |||||||||    
T  1442 cagatcctgtacaattttaaactttgaaggctcggccaataatcttcgatttgcaacatatattttgcagaatgcgaggcttttacaagatatgacaatc 1343  T

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