View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14360_high_1 (Length: 750)
Name: NF14360_high_1
Description: NF14360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14360_high_1 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 554; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 3 - 750
Target Start/End: Complemental strand, 36330233 - 36329489
Alignment:
| Q |
3 |
cattacttgaaacttttaggtgttaaatagagaaaaacatggtataaaagtactcatgtaaggtacgagcgttcagaatcaatccaaatcaaaacaaagc |
102 |
Q |
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| T |
36330233 |
cattacttgaaatttttaggtgttaaatagagcaaaacatggtataaaagttctcatgtaaggtaggagcgttcatattcaatctaattcaaatcaaaac |
36330134 |
T |
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| Q |
103 |
tgcaaaccgagtnnnnnnnnnnnnnnnnnnccaactaacgatctcaacaaactaagtaactcctctgacttgttcaacaagtcactaactaactaaaaca |
202 |
Q |
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| T |
36330133 |
tgcaaaccga-ttaaaaaaaactgaaaaaaccaactaacgatctcaacaaactaagtaactcctctgacttgttcaacaagtcactaactaactaaaaca |
36330035 |
T |
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| Q |
203 |
gttatttgcacaatataaatcaattcatgaatcgattcactacttacttgaattacaagtaattattcctaaatatgaattatctcacaacaatcagatg |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36330034 |
gttatttgcacaatataaatcaattcatgaatcgattcactacttacttgaattacaagtaattattcctaaatatgaattatctcacaacaattagata |
36329935 |
T |
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| Q |
303 |
gaacttgttagattcgttagaacttaattttggtctgcccatgctgcttttcctaggctcatggacttattatctgttatccgtgatgggcttatactgt |
402 |
Q |
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| T |
36329934 |
gaacttgttagattcgttagaacttaattttggtctgcccatgctgcttttcctagggtcatggacttattatctgttatccgtgatgggcttatactgt |
36329835 |
T |
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| Q |
403 |
ttctcatatggtataaggggttactaattgctatttgccaccctttttctactacacgccatctccatgtaaattaacttgtcccctcaaaataacnnnn |
502 |
Q |
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| T |
36329834 |
ttctcatatggtataaggggttgctaattgctatttgccaccctttttctactacacgccatctccatgtaaattaacttgtcccctcaaaataactttt |
36329735 |
T |
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| Q |
503 |
nnncctaccacacagtatctatccaatcaataatttaattaataatacataaatctatctctgaaagannnnnnnnnagcaaaaacctatgttctgaaag |
602 |
Q |
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| T |
36329734 |
tttcctaccacacattatctatccaatcaataatttaattaataacacataaatctatctctgaaag-tttttttttagcaaaaacctatgttctgaaag |
36329636 |
T |
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| Q |
603 |
ttgtttccaaattatttatacttttgagatatatagaatgttgccgatgaaaggtgtatatatttagcaaaaataaaatgtgtatatagtatgaaaactt |
702 |
Q |
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| T |
36329635 |
ttgtttccaaattatttatacttttgggatatatagaatgttgccgatgaaaggtgtatata-ttagcaaaaataaaatgtgtatatagtatgaaaactt |
36329537 |
T |
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| Q |
703 |
accaaacactcaaagaagccagaaataagaacggttttatatcttcca |
750 |
Q |
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| T |
36329536 |
accaaacactcaaagaagccagaaataagaacggttttatatcttcca |
36329489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 697 - 750
Target Start/End: Complemental strand, 36322744 - 36322691
Alignment:
| Q |
697 |
aaacttaccaaacactcaaagaagccagaaataagaacggttttatatcttcca |
750 |
Q |
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| T |
36322744 |
aaacttaccaaaaactcaaagcagccagaaataagaacggatttgtgtcttcca |
36322691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 4e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 145 - 337
Target Start/End: Original strand, 115015 - 115217
Alignment:
| Q |
145 |
ctcaacaaactaagtaactcctctgacttgttcaacaagtcacta----actaactaaaacagttatttgcacaatataaatcaattcatgaatcgattc |
240 |
Q |
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| T |
115015 |
ctcaataaactaactaactccactgacttgttcaacaagtcactagcatactaactaaaacagctaattgcacaatatgaatcaattcacgaatcgattc |
115114 |
T |
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| Q |
241 |
actacttacttgaattac------aagtaattattcctaaatatgaattatctcacaacaatcagatggaacttgttagattcgttagaacttaattttg |
334 |
Q |
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| T |
115115 |
actgcttacttgtattacaagtaaaagtaattattcataaacaagaattatctcacaacagttacatggaacttgttagattcattagaatttaattttg |
115214 |
T |
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| Q |
335 |
gtc |
337 |
Q |
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||| |
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| T |
115215 |
gtc |
115217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 134 - 280
Target Start/End: Original strand, 32986221 - 32986364
Alignment:
| Q |
134 |
caactaacgatctcaacaaactaagtaactcctctgacttgttcaacaagtcactaactaactaaaacagttatttgcacaatataaatcaattcatgaa |
233 |
Q |
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|||||||| |||||||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||||| | || ||||| || ||||| || |
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| T |
32986221 |
caactaaccatctcaacaaactagctaacacctcttacttgttcaacaagtcactaacta---aaaacagttatgtaaactatatagattgattcaccaa |
32986317 |
T |
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| Q |
234 |
tcgattcactacttacttgaattacaagtaattattcctaaatatga |
280 |
Q |
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| T |
32986318 |
tcaattcacagattacttgtattacaagtgattattcttaaacatga |
32986364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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