View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14360_high_2 (Length: 474)

Name: NF14360_high_2
Description: NF14360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14360_high_2
NF14360_high_2
[»] chr2 (2 HSPs)
chr2 (133-458)||(45402378-45402703)
chr2 (339-457)||(18812111-18812229)
[»] chr3 (2 HSPs)
chr3 (228-459)||(23361965-23362196)
chr3 (389-432)||(47351659-47351702)
[»] chr5 (2 HSPs)
chr5 (276-458)||(19611527-19611709)
chr5 (23-93)||(19613185-19613255)
[»] chr6 (1 HSPs)
chr6 (279-458)||(7600281-7600460)
[»] chr4 (1 HSPs)
chr4 (279-458)||(28462062-28462241)


Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 133 - 458
Target Start/End: Complemental strand, 45402703 - 45402378
Alignment:
Q  133 aaaatatccggttaggctctatccatgatttttgttgcagggatagagaccaggtagtgtttgtgagtagcattatgataaaaaatagtagggtgtatta 232  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45402703 aaaatatccggttaggctctatccatgatttttgttgcaaggatagagaccaggtaatgtttgtgagtagcattatgataaaaaatagtagggtgtatta 45402604  T
Q  233 tgattagactacgtgcatataataatctaataaagtggactacaacactttttaactccctgccaccaatattttatcctataatttgagaaaattctag 332  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  45402603 cgattagactacgtgcatataataatctaataatgtggactacaacactttttaactccctgccaccaatattttaccctataatatgagaaatttctag 45402504  T
Q  333 ttcacctatttttcctcctctgccaagaaacaactttccaacttgtgaattaaaagctctactaagtaccaatatacaatcagttatataagcatacata 432  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45402503 ttcacctattttacctcctctgccaagaaacaactttccaacttgtgaattaaaagctctactaagtaccaatatacaatcagttatataagcatacata 45402404  T
Q  433 acgagcatgtctaaagtgataacatt 458  Q
    | ||||||||||||||||||||||||    
T  45402403 atgagcatgtctaaagtgataacatt 45402378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 339 - 457
Target Start/End: Complemental strand, 18812229 - 18812111
Alignment:
Q  339 tatttttcctcctctgccaagaaacaactttccaacttgtgaattaaaagctctactaagtaccaatatacaatcagttatataagcatacataacgagc 438  Q
    |||||||| ||| || |||||||| |||| | || | || ||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||      
T  18812229 tatttttcatccactaccaagaaaaaactattcatcatgggaattaaaacctctactaaataccaatatacaataagttatataagcatacataacgaat 18812130  T
Q  439 atgtctaaagtgataacat 457  Q
     | |||||| |||||||||    
T  18812129 ttttctaaaatgataacat 18812111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 228 - 459
Target Start/End: Complemental strand, 23362196 - 23361965
Alignment:
Q  228 tattatgattagactacgtgcatataataatctaataaagtggactacaacactttttaactccctgccaccaatattttatcctataatttgagaaaat 327  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  23362196 tattacgattagactacgtgcatataataatctaataatgtggactacaacactttttaactccctgccaccaatattttaccctataatctgagaaaat 23362097  T
Q  328 tctagttcacctatttttcctcctctgccaagaaacaactttccaacttgtgaattaaaagctctactaagtaccaatatacaatcagttatataagcat 427  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23362096 tctagttcacctatttttcctcctctgccaagaaacaactttccaacttgtgaattaaaagctctactaagtaccaatatacaatcagttatataagcat 23361997  T
Q  428 acataacgagcatgtctaaagtgataacattt 459  Q
    ||||||||||||||||||||||||||||||||    
T  23361996 acataacgagcatgtctaaagtgataacattt 23361965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 432
Target Start/End: Complemental strand, 47351702 - 47351659
Alignment:
Q  389 ctctactaagtaccaatatacaatcagttatataagcatacata 432  Q
    ||||||||| ||||||||||||||||||||||||| || |||||    
T  47351702 ctctactaaataccaatatacaatcagttatataaacaaacata 47351659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 276 - 458
Target Start/End: Complemental strand, 19611709 - 19611527
Alignment:
Q  276 aacactttttaactccctgccaccaatattttatcctataatttgagaaaattctagttcacctatttttcctcctctgccaagaaacaactttccaact 375  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19611709 aacactttttaactccctgccaccaatattttaccctataatctgagaaaattctagttcacctatttttcctcctctgccaagaaacaactttccaact 19611610  T
Q  376 tgtgaattaaaagctctactaagtaccaatatacaatcagttatataagcatacataacgagcatgtctaaagtgataacatt 458  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19611609 tgtgaattaaaagctctactaagtaccaatatacaatcagttatataagcatacataatgagcatgtctaaagtgataacatt 19611527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 19613255 - 19613185
Alignment:
Q  23 ttgtaaaaccagtttttgcaattcatttttgtgatgccatggagagagcataaacagaaaatctcaaggaa 93  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19613255 ttgtaaaaccagttcttgcaattcatttttgtgatgccatggagagagcataaacagaaaatctcaaggaa 19613185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 168; Significance: 7e-90; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 279 - 458
Target Start/End: Complemental strand, 7600460 - 7600281
Alignment:
Q  279 actttttaactccctgccaccaatattttatcctataatttgagaaaattctagttcacctatttttcctcctctgccaagaaacaactttccaacttgt 378  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7600460 actttttaactccctgccaccaatattttaccctataatctgagaaaattctagttcacctatttttcctcctctgccaagaaacaactttccaacttgt 7600361  T
Q  379 gaattaaaagctctactaagtaccaatatacaatcagttatataagcatacataacgagcatgtctaaagtgataacatt 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  7600360 gaattaaaagctctactaagtaccaatatacaatcagttatataagcatacataatgagcatgtctaaagtgataacatt 7600281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 168; Significance: 7e-90; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 279 - 458
Target Start/End: Original strand, 28462062 - 28462241
Alignment:
Q  279 actttttaactccctgccaccaatattttatcctataatttgagaaaattctagttcacctatttttcctcctctgccaagaaacaactttccaacttgt 378  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28462062 actttttaactccctgccaccaatattttaccctataatctgagaaaattctagttcacctatttttcctcctctgccaagaaacaactttccaacttgt 28462161  T
Q  379 gaattaaaagctctactaagtaccaatatacaatcagttatataagcatacataacgagcatgtctaaagtgataacatt 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28462162 gaattaaaagctctactaagtaccaatatacaatcagttatataagcatacataatgagcatgtctaaagtgataacatt 28462241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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