View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14361_high_10 (Length: 298)
Name: NF14361_high_10
Description: NF14361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14361_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 31727142 - 31726863
Alignment:
| Q |
1 |
tcataggaatcaatatgaccaaagagcataactttgttatgacgggtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatca |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31727142 |
tcataggaatcactatgaccaaagagcataactttgttatgacgggtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatga |
31727043 |
T |
|
| Q |
101 |
aaccatcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcaccatagattgtgatcccatcaccatccgatctttctttcctaacacg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31727042 |
aaccatcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcaccatagattgtgatcccatcaccatccgatctttctttcctaacacg |
31726943 |
T |
|
| Q |
201 |
atggcaatgaagaaatgttgttggtcttcaatctcttacaaggaagtacacttgatgatttttaacataataatgattac |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31726942 |
atggcaatgaagaaatgttgttggtcttcaatctcttacaaggaagtacacttgatgatttttaacataataatgattac |
31726863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 39082505 - 39082302
Alignment:
| Q |
1 |
tcataggaatcaatatgaccaaagagcataactttgttatgacgggtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatca |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39082505 |
tcataggaatcactatgaccaaagagcataactttgttatgacgtgtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatca |
39082406 |
T |
|
| Q |
101 |
aaccatcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcaccatagattgtgatcccatcaccatccgatctttctttcctaacacg |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39082405 |
aaccgtcaaaacaatttgacaaggaacaatgatccacccaaatatgagccgcaccatatattgtaatcccatcaccatccgatctttctttcctaacacg |
39082306 |
T |
|
| Q |
201 |
atgg |
204 |
Q |
| |
|
|||| |
|
|
| T |
39082305 |
atgg |
39082302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 39076048 - 39075949
Alignment:
| Q |
9 |
atcaatatgaccaaagagcataactttgttatgacgggtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatcaaaccatca |
108 |
Q |
| |
|
|||| ||||||| || |||||||| || |||||| | ||||| |||||||||||||||||| ||| || |||||||||| ||||||||| || |||||| |
|
|
| T |
39076048 |
atcactatgacccaaaagcataaccttattatgatgagtcatgaaattattagaaatagtaatagctgtagatccatgaataacatcaattaatccatca |
39075949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 7593333 - 7593472
Alignment:
| Q |
7 |
gaatcaatatgaccaaagagcataactttgttatgacgggtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatcaaaccat |
106 |
Q |
| |
|
|||||| |||| || || ||||||||||||| |||| | |||||||| ||||| |||||||||| ||| | |||||||| | ||||||||| | ||||| |
|
|
| T |
7593333 |
gaatcactatgtcccaaaagcataactttgtcatgatgagtcatatagttatttgaaatagtaatagcattagatccatgtataacatcaataagaccat |
7593432 |
T |
|
| Q |
107 |
caaaacaatttgacaaggaacaatgatccacccaaatatg |
146 |
Q |
| |
|
|| |||||| ||||| ||||||||||| | ||||||||| |
|
|
| T |
7593433 |
cacgacaattagacaaagaacaatgatcaatccaaatatg |
7593472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 147
Target Start/End: Complemental strand, 43131482 - 43131344
Alignment:
| Q |
9 |
atcaatatgaccaaagagcataactttgttatgacgggtcatataattattagaaatagtaacagccgttgatccatgaacaacatcaatcaaaccatca |
108 |
Q |
| |
|
|||| ||||||| || ||||||||||| | ||| | ||||||||||| ||||| || |||| || || || ||||||| | ||||||||||||||||| |
|
|
| T |
43131482 |
atcactatgacccaaaagcataactttatcatggtgagtcatataattgttagagatggtaattgcagtggacccatgaatagcatcaatcaaaccatca |
43131383 |
T |
|
| Q |
109 |
aaacaatttgacaaggaacaatgatccacccaaatatga |
147 |
Q |
| |
|
||| || ||||| ||||||||||||||||||| |||| |
|
|
| T |
43131382 |
ttacagttagacaaagaacaatgatccacccaaacatga |
43131344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 34523012 - 34522974
Alignment:
| Q |
203 |
ggcaatgaagaaatgttgttggtcttcaatctcttacaa |
241 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
34523012 |
ggcaatgaagaaatgttattagtcttcaatctcttacaa |
34522974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University